miRNA display CGI


Results 1 - 20 of 494 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6530 5' -57.9 NC_001847.1 + 52458 0.66 0.844924
Target:  5'- aGCGgCGCCCGacucaugaccacagcACGAgcgCGGCGCGc-- -3'
miRNA:   3'- gUGCgGCGGGU---------------UGCUa--GUCGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 127851 0.66 0.842536
Target:  5'- gGCGCCGCgCCAGCGGcUCGuacugcggagcgucuCGCGUGc -3'
miRNA:   3'- gUGCGGCG-GGUUGCU-AGUc--------------GCGCACc -5'
6530 5' -57.9 NC_001847.1 + 15373 0.66 0.841737
Target:  5'- --gGCCaGCCUucggGGCGGUCGGCGuCG-GGg -3'
miRNA:   3'- gugCGG-CGGG----UUGCUAGUCGC-GCaCC- -5'
6530 5' -57.9 NC_001847.1 + 80912 0.66 0.841737
Target:  5'- --gGCCGCCCAAg---CGGC-CGUGGc -3'
miRNA:   3'- gugCGGCGGGUUgcuaGUCGcGCACC- -5'
6530 5' -57.9 NC_001847.1 + 54533 0.66 0.841737
Target:  5'- gGgGCCGUCCGggggcgcagacgGCGGgggCGGCGCGgaGGa -3'
miRNA:   3'- gUgCGGCGGGU------------UGCUa--GUCGCGCa-CC- -5'
6530 5' -57.9 NC_001847.1 + 102863 0.66 0.841737
Target:  5'- gGgGCCGCgCCAcGCGGaCGGCGCGa-- -3'
miRNA:   3'- gUgCGGCG-GGU-UGCUaGUCGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 110893 0.66 0.841737
Target:  5'- aCAUGCucuCGCCCGcCGcgCGGCGgcugaaCGUGGa -3'
miRNA:   3'- -GUGCG---GCGGGUuGCuaGUCGC------GCACC- -5'
6530 5' -57.9 NC_001847.1 + 67749 0.66 0.841737
Target:  5'- aCGCGCCGgCgCAuuguggagACGggCAGCGCGg-- -3'
miRNA:   3'- -GUGCGGCgG-GU--------UGCuaGUCGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 130957 0.66 0.841737
Target:  5'- gCGCGCgGCCC-ACG---GGCGCGcGGc -3'
miRNA:   3'- -GUGCGgCGGGuUGCuagUCGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 13217 0.66 0.841737
Target:  5'- uCGgGCCGCUCGGCGAgcucCGCGaUGGc -3'
miRNA:   3'- -GUgCGGCGGGUUGCUagucGCGC-ACC- -5'
6530 5' -57.9 NC_001847.1 + 132785 0.66 0.841737
Target:  5'- -cCGCCGCCgAcGCGGccgggcCGGCGCGgcgGGa -3'
miRNA:   3'- guGCGGCGGgU-UGCUa-----GUCGCGCa--CC- -5'
6530 5' -57.9 NC_001847.1 + 74335 0.66 0.841737
Target:  5'- -cCGCUGCCgCAggcGCGcgCGcugguggcGCGCGUGGu -3'
miRNA:   3'- guGCGGCGG-GU---UGCuaGU--------CGCGCACC- -5'
6530 5' -57.9 NC_001847.1 + 17709 0.66 0.841737
Target:  5'- cCACGCCGCagugcacguaCAGCGGcUCGGCGUa--- -3'
miRNA:   3'- -GUGCGGCGg---------GUUGCU-AGUCGCGcacc -5'
6530 5' -57.9 NC_001847.1 + 29972 0.66 0.841737
Target:  5'- -cCGCCGCCgAcGCGGccgggcCGGCGCGgcgGGa -3'
miRNA:   3'- guGCGGCGGgU-UGCUa-----GUCGCGCa--CC- -5'
6530 5' -57.9 NC_001847.1 + 70051 0.66 0.841737
Target:  5'- aGCGCgGCCUucuCGAUCgccgccgaAGCGC-UGGg -3'
miRNA:   3'- gUGCGgCGGGuu-GCUAG--------UCGCGcACC- -5'
6530 5' -57.9 NC_001847.1 + 108836 0.66 0.841737
Target:  5'- gACGCUGCCCcACGAcUCGcCGCGa-- -3'
miRNA:   3'- gUGCGGCGGGuUGCU-AGUcGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 59630 0.66 0.841737
Target:  5'- gACGCCGCCCG-CGA-CcGCGCu--- -3'
miRNA:   3'- gUGCGGCGGGUuGCUaGuCGCGcacc -5'
6530 5' -57.9 NC_001847.1 + 81172 0.66 0.841737
Target:  5'- cCGCGCCGCUCGgagggcucGCGG-CGGCGCc--- -3'
miRNA:   3'- -GUGCGGCGGGU--------UGCUaGUCGCGcacc -5'
6530 5' -57.9 NC_001847.1 + 96875 0.66 0.839327
Target:  5'- -cCGCCGCCCGcGCGugcggaaauaaauuGUCGGUgGCGUGc -3'
miRNA:   3'- guGCGGCGGGU-UGC--------------UAGUCG-CGCACc -5'
6530 5' -57.9 NC_001847.1 + 49713 0.66 0.8369
Target:  5'- gCGCGgCGCCCGugcaagugggcgccgGCGAggcgguGCGCGUGc -3'
miRNA:   3'- -GUGCgGCGGGU---------------UGCUagu---CGCGCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.