Results 1 - 20 of 411 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6567 | 3' | -67.3 | NC_001847.1 | + | 52136 | 0.65 | 0.407488 |
Target: 5'- gGCGCCCCAGCGgaccgacgaggccgUGGC-CaGGcuccGCCGg -3' miRNA: 3'- gCGCGGGGUCGC--------------ACCGcGaCCc---CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 107463 | 0.66 | 0.401855 |
Target: 5'- gCGCGCCUCAGCccgacGCGCcGcgucgagcaGGGCCGg -3' miRNA: 3'- -GCGCGGGGUCGcac--CGCGaC---------CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 7251 | 0.66 | 0.401855 |
Target: 5'- gGUGgCUguGCG-GGCGCggcgGGGGCaCGc -3' miRNA: 3'- gCGCgGGguCGCaCCGCGa---CCCCG-GC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 69429 | 0.66 | 0.401855 |
Target: 5'- uGCGgCUCAGCGcGGCGgUGGcGGaCGg -3' miRNA: 3'- gCGCgGGGUCGCaCCGCgACC-CCgGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 135000 | 0.66 | 0.401855 |
Target: 5'- gGCcCCCCGGCcggGGCccgaggcccGCgggcGGGGCCGg -3' miRNA: 3'- gCGcGGGGUCGca-CCG---------CGa---CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 2856 | 0.66 | 0.401855 |
Target: 5'- gCGCGCgCCAGCGcccaGGCcgacGC-GcGGGCCGc -3' miRNA: 3'- -GCGCGgGGUCGCa---CCG----CGaC-CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 4650 | 0.66 | 0.401855 |
Target: 5'- gCGCGCCUCAGCccgacGCGCcGcgucgagcaGGGCCGg -3' miRNA: 3'- -GCGCGGGGUCGcac--CGCGaC---------CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 37034 | 0.66 | 0.401855 |
Target: 5'- gGCGCCgggcucgcacuCUAGCcUGG-GCUGGGGgCGg -3' miRNA: 3'- gCGCGG-----------GGUCGcACCgCGACCCCgGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 60011 | 0.66 | 0.401855 |
Target: 5'- cCGCcgGCCCCGGCG-GG-GCccGGGCCu -3' miRNA: 3'- -GCG--CGGGGUCGCaCCgCGacCCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 32187 | 0.66 | 0.401855 |
Target: 5'- gGCcCCCCGGCcggGGCccgaggcccGCgggcGGGGCCGg -3' miRNA: 3'- gCGcGGGGUCGca-CCG---------CGa---CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 105669 | 0.66 | 0.401855 |
Target: 5'- gCGCGCgCCAGCGcccaGGCcgacGC-GcGGGCCGc -3' miRNA: 3'- -GCGCGgGGUCGCa---CCG----CGaC-CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 37324 | 0.66 | 0.401855 |
Target: 5'- gCGCGCCgagcaCAGCGcUGGCGUgcggucaugcgGcGGGUCGa -3' miRNA: 3'- -GCGCGGg----GUCGC-ACCGCGa----------C-CCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 46509 | 0.66 | 0.401855 |
Target: 5'- aGCGUUgCCAGCGgcaGCGCUcgGGGGgCGg -3' miRNA: 3'- gCGCGG-GGUCGCac-CGCGA--CCCCgGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 45856 | 0.66 | 0.401855 |
Target: 5'- uCGCGCUCUucgccGCcggGGUucaGCUGGGGCCc -3' miRNA: 3'- -GCGCGGGGu----CGca-CCG---CGACCCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 36087 | 0.66 | 0.393893 |
Target: 5'- aCGCGCggcuggcggagCgCGGCGacGCGCUGGGcGCCu -3' miRNA: 3'- -GCGCG-----------GgGUCGCacCGCGACCC-CGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 102642 | 0.66 | 0.393893 |
Target: 5'- gCGCGUCUCGGgGUGacGCGCcgGGagcGGCCGc -3' miRNA: 3'- -GCGCGGGGUCgCAC--CGCGa-CC---CCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 88276 | 0.66 | 0.393893 |
Target: 5'- aCGCGUCCCGGCuuugcacUGGCcuugcgccGCgGGGGCgGu -3' miRNA: 3'- -GCGCGGGGUCGc------ACCG--------CGaCCCCGgC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 29394 | 0.66 | 0.393893 |
Target: 5'- cCGCGCUggaGGCGgccGCGCUGGcGGCgCGg -3' miRNA: 3'- -GCGCGGgg-UCGCac-CGCGACC-CCG-GC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 4476 | 0.66 | 0.393893 |
Target: 5'- gGCGCCCCccGCGUcccuGGCGCcGGcguccucGCCGa -3' miRNA: 3'- gCGCGGGGu-CGCA----CCGCGaCCc------CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 60801 | 0.66 | 0.393893 |
Target: 5'- gCGCGCCaCCAGCGcGcGCGCcUGcGGCa- -3' miRNA: 3'- -GCGCGG-GGUCGCaC-CGCG-ACcCCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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