miRNA display CGI


Results 1 - 20 of 876 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6571 5' -63.3 NC_001847.1 + 101898 0.66 0.626421
Target:  5'- aCCGCggcagCGGaGGCGCCGcggcGCCCGgcgcggCGCCa -3'
miRNA:   3'- -GGCG-----GCCcUUGCGGU----CGGGCa-----GCGGg -5'
6571 5' -63.3 NC_001847.1 + 61896 0.66 0.626421
Target:  5'- gCGCaCGGccucGAgcGCGCCcGCgCCGcCGCCCc -3'
miRNA:   3'- gGCG-GCC----CU--UGCGGuCG-GGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 4405 0.66 0.626421
Target:  5'- gCCGCCGucGACGCCgacggcggcgAGCgCG-CGCCg -3'
miRNA:   3'- -GGCGGCccUUGCGG----------UCGgGCaGCGGg -5'
6571 5' -63.3 NC_001847.1 + 48682 0.66 0.626421
Target:  5'- gCCGCCGucGGCGCC-GUCgG-CGUCCa -3'
miRNA:   3'- -GGCGGCccUUGCGGuCGGgCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 36351 0.66 0.626421
Target:  5'- gCGCCGcGGcgcgcgcacgcGGCGCCgccgcGGCCCGggcagcgCGCgCCg -3'
miRNA:   3'- gGCGGC-CC-----------UUGCGG-----UCGGGCa------GCG-GG- -5'
6571 5' -63.3 NC_001847.1 + 106621 0.66 0.626421
Target:  5'- gCgGCCGGGcGGCGgCGGCgCGcUGCCg -3'
miRNA:   3'- -GgCGGCCC-UUGCgGUCGgGCaGCGGg -5'
6571 5' -63.3 NC_001847.1 + 30865 0.66 0.626421
Target:  5'- cUCGCCGaagucgauGGcguuuGCGCCAgucGCCCGgccgcaGCCCg -3'
miRNA:   3'- -GGCGGC--------CCu----UGCGGU---CGGGCag----CGGG- -5'
6571 5' -63.3 NC_001847.1 + 32562 0.66 0.626421
Target:  5'- gCGCUGGGcgaccuggcgGACGCCAagcugcGCCUaGUCGCggCCg -3'
miRNA:   3'- gGCGGCCC----------UUGCGGU------CGGG-CAGCG--GG- -5'
6571 5' -63.3 NC_001847.1 + 87407 0.66 0.626421
Target:  5'- gCGCgCGGGcGGgGCCccGCCCGccgCGCUCg -3'
miRNA:   3'- gGCG-GCCC-UUgCGGu-CGGGCa--GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 3808 0.66 0.626421
Target:  5'- gCgGCCGGGcGGCGgCGGCgCGcUGCCg -3'
miRNA:   3'- -GgCGGCCC-UUGCgGUCGgGCaGCGGg -5'
6571 5' -63.3 NC_001847.1 + 60412 0.66 0.626421
Target:  5'- -aGCCGGGu-CGCCgAGCuaauccaggCCGccagCGCCCc -3'
miRNA:   3'- ggCGGCCCuuGCGG-UCG---------GGCa---GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 96692 0.66 0.626421
Target:  5'- gCCGgCGGGuacgcguCGCCAauCUCGUCGUCUa -3'
miRNA:   3'- -GGCgGCCCuu-----GCGGUc-GGGCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 104139 0.66 0.626421
Target:  5'- gCGCCGGcAACGCCGGacauggugCCGcuUCGCUg -3'
miRNA:   3'- gGCGGCCcUUGCGGUCg-------GGC--AGCGGg -5'
6571 5' -63.3 NC_001847.1 + 82140 0.66 0.626421
Target:  5'- gCCGCCGcugucGGcucCGCCAuGCCUGcgCGUCCc -3'
miRNA:   3'- -GGCGGC-----CCuu-GCGGU-CGGGCa-GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 123631 0.66 0.626421
Target:  5'- uCgGCCGGGGcgGCGCCcuuGGCUgaaGgCGCCUg -3'
miRNA:   3'- -GgCGGCCCU--UGCGG---UCGGg--CaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 87448 0.66 0.626421
Target:  5'- cCCGgCGGccgccAACGCCgaGGaCCuCGUCGUCCa -3'
miRNA:   3'- -GGCgGCCc----UUGCGG--UC-GG-GCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 76072 0.66 0.626421
Target:  5'- -gGCgaGGGcGCGCCAGCCgagcUGcCGCCUc -3'
miRNA:   3'- ggCGg-CCCuUGCGGUCGG----GCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 34152 0.66 0.626421
Target:  5'- gCCGCCGcGGcGGCaCCu-UCCGUCGCUCg -3'
miRNA:   3'- -GGCGGC-CC-UUGcGGucGGGCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 33993 0.66 0.626421
Target:  5'- gCC-CCGGccccGGCcCCAGCCCccgCGCCCa -3'
miRNA:   3'- -GGcGGCCc---UUGcGGUCGGGca-GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 13066 0.66 0.626421
Target:  5'- gUCGCCGGcguCGCCgaugAGCCgGUCGUa- -3'
miRNA:   3'- -GGCGGCCcuuGCGG----UCGGgCAGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.