miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6574 5' -53.1 NC_001847.1 + 18123 0.66 0.968763
Target:  5'- cCGCGGCGGug-GGGCGCGCgcgaAAGUc -3'
miRNA:   3'- cGCGUUGCUguaCCUGCGCGac--UUCA- -5'
6574 5' -53.1 NC_001847.1 + 57080 0.66 0.968763
Target:  5'- aGCGCGGCGGCcagcGCuGCGCUGGAc- -3'
miRNA:   3'- -CGCGUUGCUGuaccUG-CGCGACUUca -5'
6574 5' -53.1 NC_001847.1 + 12815 0.66 0.968763
Target:  5'- cGCGUGGCGcGCGaGcGGCGCGCUugGGAGa -3'
miRNA:   3'- -CGCGUUGC-UGUaC-CUGCGCGA--CUUCa -5'
6574 5' -53.1 NC_001847.1 + 78972 0.66 0.968763
Target:  5'- cGCGCAGCcuCggGGGCGUGCUcGGGc -3'
miRNA:   3'- -CGCGUUGcuGuaCCUGCGCGAcUUCa -5'
6574 5' -53.1 NC_001847.1 + 80151 0.66 0.968763
Target:  5'- aGCGCcgccAUGACgcuGUGGuACGCGUUGcAGUg -3'
miRNA:   3'- -CGCGu---UGCUG---UACC-UGCGCGACuUCA- -5'
6574 5' -53.1 NC_001847.1 + 70742 0.66 0.968763
Target:  5'- cGCGCGuaaagGCgGACcUGGugGCcGUUGggGa -3'
miRNA:   3'- -CGCGU-----UG-CUGuACCugCG-CGACuuCa -5'
6574 5' -53.1 NC_001847.1 + 11894 0.66 0.968763
Target:  5'- cUGguGCGGCcgGGGucCGCGCUGgcGc -3'
miRNA:   3'- cGCguUGCUGuaCCU--GCGCGACuuCa -5'
6574 5' -53.1 NC_001847.1 + 94242 0.66 0.968763
Target:  5'- cGCGCGGCGcCGUGGAgcggcuCGCGCc----- -3'
miRNA:   3'- -CGCGUUGCuGUACCU------GCGCGacuuca -5'
6574 5' -53.1 NC_001847.1 + 90289 0.66 0.967824
Target:  5'- gGCGCGGCGACGUGcguuuuuggagcgcGAcCGCGCccauugccgacUGggGc -3'
miRNA:   3'- -CGCGUUGCUGUAC--------------CU-GCGCG-----------ACuuCa -5'
6574 5' -53.1 NC_001847.1 + 87295 0.66 0.967824
Target:  5'- cGCGCAgcacgcgaccuccuGCGACGUGGAagucaacugcacCGCGgacaacCUGGAGc -3'
miRNA:   3'- -CGCGU--------------UGCUGUACCU------------GCGC------GACUUCa -5'
6574 5' -53.1 NC_001847.1 + 73765 0.66 0.966866
Target:  5'- cGgGCGGCGGCGcGGGCcgcuacgagcgcgggGCGCUGGAn- -3'
miRNA:   3'- -CgCGUUGCUGUaCCUG---------------CGCGACUUca -5'
6574 5' -53.1 NC_001847.1 + 49585 0.66 0.965557
Target:  5'- cCGaCGGCGGCGccUGGGCGCaGCgGGAGc -3'
miRNA:   3'- cGC-GUUGCUGU--ACCUGCG-CGaCUUCa -5'
6574 5' -53.1 NC_001847.1 + 83187 0.66 0.965557
Target:  5'- gGCG-GACGGCGggGGGCGCGCaGAc-- -3'
miRNA:   3'- -CGCgUUGCUGUa-CCUGCGCGaCUuca -5'
6574 5' -53.1 NC_001847.1 + 86738 0.66 0.965557
Target:  5'- cCGCGgaggGCGAUGUGu-CGCGCUGgcGUg -3'
miRNA:   3'- cGCGU----UGCUGUACcuGCGCGACuuCA- -5'
6574 5' -53.1 NC_001847.1 + 37231 0.66 0.965557
Target:  5'- gGCGCgGACGACccGGcggacgGCGCGCUGu--- -3'
miRNA:   3'- -CGCG-UUGCUGuaCC------UGCGCGACuuca -5'
6574 5' -53.1 NC_001847.1 + 28236 0.66 0.965557
Target:  5'- aUGCAGCG-CGUGGugGUGgaGuGGg -3'
miRNA:   3'- cGCGUUGCuGUACCugCGCgaCuUCa -5'
6574 5' -53.1 NC_001847.1 + 48839 0.66 0.965557
Target:  5'- cGCGCGGgGGCGccucGGcCGCGCggcgcGAGGUa -3'
miRNA:   3'- -CGCGUUgCUGUa---CCuGCGCGa----CUUCA- -5'
6574 5' -53.1 NC_001847.1 + 109260 0.66 0.965557
Target:  5'- aGCGgGuCGGCAgGGGCGgGCUGcAAGc -3'
miRNA:   3'- -CGCgUuGCUGUaCCUGCgCGAC-UUCa -5'
6574 5' -53.1 NC_001847.1 + 92988 0.66 0.965557
Target:  5'- cGUGCAGCcACAcGcGA-GCGCUGGAGg -3'
miRNA:   3'- -CGCGUUGcUGUaC-CUgCGCGACUUCa -5'
6574 5' -53.1 NC_001847.1 + 33314 0.66 0.965557
Target:  5'- uGCGCAGCcuguuguuCGUGGcgGCGCGCUGc-GUg -3'
miRNA:   3'- -CGCGUUGcu------GUACC--UGCGCGACuuCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.