miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6585 5' -58.8 NC_001847.1 + 15851 0.65 0.774747
Target:  5'- cGUCGAuguacagcGCGCGUCgguacugGCCcucgacgagccgcGCGGGCGCc- -3'
miRNA:   3'- -CAGCU--------CGCGCAGa------UGG-------------CGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 101450 0.66 0.766318
Target:  5'- --gGGGCGCGgaaaCUGCCGCc-GCGCg- -3'
miRNA:   3'- cagCUCGCGCa---GAUGGCGcuCGCGau -5'
6585 5' -58.8 NC_001847.1 + 52551 0.66 0.766318
Target:  5'- --aGGGCGCGgccgacaUGCUGCGAGaGCUGg -3'
miRNA:   3'- cagCUCGCGCag-----AUGGCGCUCgCGAU- -5'
6585 5' -58.8 NC_001847.1 + 29333 0.66 0.766318
Target:  5'- -gCGAGCGCGagUG-CGCGGGCGg-- -3'
miRNA:   3'- caGCUCGCGCagAUgGCGCUCGCgau -5'
6585 5' -58.8 NC_001847.1 + 54049 0.66 0.766318
Target:  5'- cGUCGGcGCGCGgcgaggCcGCCGCcAGCGCc- -3'
miRNA:   3'- -CAGCU-CGCGCa-----GaUGGCGcUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 77242 0.66 0.766318
Target:  5'- cUUG-GCGCgGUCg--CGCGGGCGCUGg -3'
miRNA:   3'- cAGCuCGCG-CAGaugGCGCUCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 101366 0.66 0.766318
Target:  5'- -aUGcGCGCG-CUugcGCCGCGGGgGCUGc -3'
miRNA:   3'- caGCuCGCGCaGA---UGGCGCUCgCGAU- -5'
6585 5' -58.8 NC_001847.1 + 29709 0.66 0.766318
Target:  5'- cUUGGGCGCGag-ACUGCG-GCGCg- -3'
miRNA:   3'- cAGCUCGCGCagaUGGCGCuCGCGau -5'
6585 5' -58.8 NC_001847.1 + 94368 0.66 0.766318
Target:  5'- -gCGcGGCgGCGUCUGCCGC--GCGCa- -3'
miRNA:   3'- caGC-UCG-CGCAGAUGGCGcuCGCGau -5'
6585 5' -58.8 NC_001847.1 + 134147 0.66 0.766318
Target:  5'- gGUgGAGCGCGUgCcGCCGCcGGCGg-- -3'
miRNA:   3'- -CAgCUCGCGCA-GaUGGCGcUCGCgau -5'
6585 5' -58.8 NC_001847.1 + 80551 0.66 0.766318
Target:  5'- -gCGGGCGCG-C-GCCGCcAGCGCc- -3'
miRNA:   3'- caGCUCGCGCaGaUGGCGcUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 31334 0.66 0.766318
Target:  5'- gGUgGAGCGCGUgCcGCCGCcGGCGg-- -3'
miRNA:   3'- -CAgCUCGCGCA-GaUGGCGcUCGCgau -5'
6585 5' -58.8 NC_001847.1 + 14133 0.66 0.765375
Target:  5'- -gCGGGCGUGUCUccggccgGCUGCGcAGCGg-- -3'
miRNA:   3'- caGCUCGCGCAGA-------UGGCGC-UCGCgau -5'
6585 5' -58.8 NC_001847.1 + 46920 0.66 0.757793
Target:  5'- --gGGGCGCGUCgggcccgggcuccggGCCGCGuGCGg-- -3'
miRNA:   3'- cagCUCGCGCAGa--------------UGGCGCuCGCgau -5'
6585 5' -58.8 NC_001847.1 + 36953 0.66 0.75684
Target:  5'- -cCGAGCGgGggCUGCggccagCGCGGGCGCc- -3'
miRNA:   3'- caGCUCGCgCa-GAUG------GCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 36773 0.66 0.75684
Target:  5'- aUCGAGCGCGc---CCGCGA-CGCg- -3'
miRNA:   3'- cAGCUCGCGCagauGGCGCUcGCGau -5'
6585 5' -58.8 NC_001847.1 + 31300 0.66 0.75684
Target:  5'- -gCGGGCGCGgggagcgggcUCUGCUGCGuguuuucGCGCg- -3'
miRNA:   3'- caGCUCGCGC----------AGAUGGCGCu------CGCGau -5'
6585 5' -58.8 NC_001847.1 + 80175 0.66 0.75684
Target:  5'- aGUUGuGCGCG-CUGCCGUcaaaGAGCGg-- -3'
miRNA:   3'- -CAGCuCGCGCaGAUGGCG----CUCGCgau -5'
6585 5' -58.8 NC_001847.1 + 78719 0.66 0.75684
Target:  5'- -gCGGGCG-GUCUuCCGCGAcGCGgUGg -3'
miRNA:   3'- caGCUCGCgCAGAuGGCGCU-CGCgAU- -5'
6585 5' -58.8 NC_001847.1 + 57885 0.66 0.75684
Target:  5'- -aCGAGgGUGUCgcCCGCcAGCGCc- -3'
miRNA:   3'- caGCUCgCGCAGauGGCGcUCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.