miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6589 5' -59.6 NC_001847.1 + 42088 0.66 0.799388
Target:  5'- -aUCGGCCUCgcggugccggcacCGUCcaGGCGcCGGGGg -3'
miRNA:   3'- gcAGCCGGAGaa-----------GCAGc-CCGC-GCUCC- -5'
6589 5' -59.6 NC_001847.1 + 90550 0.66 0.795917
Target:  5'- uGgCGGCC-C-UCGcCGcGCGCGAGGg -3'
miRNA:   3'- gCaGCCGGaGaAGCaGCcCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 130939 0.66 0.795917
Target:  5'- ---aGGCCggCgaCGUUGGGCcCGAGGa -3'
miRNA:   3'- gcagCCGGa-GaaGCAGCCCGcGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 87769 0.66 0.795917
Target:  5'- uCGUCGaGC----UCGUCGGGCcGcCGGGGg -3'
miRNA:   3'- -GCAGC-CGgagaAGCAGCCCG-C-GCUCC- -5'
6589 5' -59.6 NC_001847.1 + 48986 0.66 0.795917
Target:  5'- --aCGGCCUCacCGggggaggggCcGGCGCGAGGu -3'
miRNA:   3'- gcaGCCGGAGaaGCa--------GcCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 28126 0.66 0.795917
Target:  5'- ---aGGCCggCgaCGUUGGGCcCGAGGa -3'
miRNA:   3'- gcagCCGGa-GaaGCAGCCCGcGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 104112 0.66 0.795917
Target:  5'- aCGUCGGCCgg--CGUUGccGGCGCGc-- -3'
miRNA:   3'- -GCAGCCGGagaaGCAGC--CCGCGCucc -5'
6589 5' -59.6 NC_001847.1 + 59722 0.66 0.795917
Target:  5'- gGUCGcgaucGCgCUCggCGUCcGGCGCGAGc -3'
miRNA:   3'- gCAGC-----CG-GAGaaGCAGcCCGCGCUCc -5'
6589 5' -59.6 NC_001847.1 + 74290 0.66 0.787143
Target:  5'- gCGcUGGCCUCgg---CGGGCGCGGa- -3'
miRNA:   3'- -GCaGCCGGAGaagcaGCCCGCGCUcc -5'
6589 5' -59.6 NC_001847.1 + 52284 0.66 0.787143
Target:  5'- gCGcCGGCUUUgugugcgCGaccgCGGGCGCGGGcGg -3'
miRNA:   3'- -GCaGCCGGAGaa-----GCa---GCCCGCGCUC-C- -5'
6589 5' -59.6 NC_001847.1 + 91690 0.66 0.787143
Target:  5'- gCGgcugCGGCUcccgCUUCGcucUCGGGCaccgcgcgacGCGAGGc -3'
miRNA:   3'- -GCa---GCCGGa---GAAGC---AGCCCG----------CGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 101120 0.66 0.787143
Target:  5'- cCGUCaGGUCUaucacUGUggagaUGGGCGCGGGGg -3'
miRNA:   3'- -GCAG-CCGGAgaa--GCA-----GCCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 96632 0.66 0.787143
Target:  5'- gCGggGGCCggCggguacgCGUCGuGCGCGGGGg -3'
miRNA:   3'- -GCagCCGGa-Gaa-----GCAGCcCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 107485 0.66 0.786259
Target:  5'- gCGUCgagcagGGCCgggUCUUccuccgagcccccCGUCGGGC-CGAGGu -3'
miRNA:   3'- -GCAG------CCGG---AGAA-------------GCAGCCCGcGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 4672 0.66 0.786259
Target:  5'- gCGUCgagcagGGCCgggUCUUccuccgagcccccCGUCGGGC-CGAGGu -3'
miRNA:   3'- -GCAG------CCGG---AGAA-------------GCAGCCCGcGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 134748 0.66 0.77824
Target:  5'- -cUCGGUCUCg--GUCGGaGCGCGGu- -3'
miRNA:   3'- gcAGCCGGAGaagCAGCC-CGCGCUcc -5'
6589 5' -59.6 NC_001847.1 + 82075 0.66 0.77824
Target:  5'- aGcCGGgCUCggCGUCuGGGCcaagcGCGGGGc -3'
miRNA:   3'- gCaGCCgGAGaaGCAG-CCCG-----CGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 19883 0.66 0.77824
Target:  5'- uGgCGGCg-CUgg--CGGGCGCGAGGu -3'
miRNA:   3'- gCaGCCGgaGAagcaGCCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 13820 0.66 0.77824
Target:  5'- aCGggGGCCgg--CGUgugaCGGuGCGCGAGGg -3'
miRNA:   3'- -GCagCCGGagaaGCA----GCC-CGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 80038 0.66 0.777342
Target:  5'- gGUCGGCgUCaUCGcCGccgccgaGGUGCGAGa -3'
miRNA:   3'- gCAGCCGgAGaAGCaGC-------CCGCGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.