miRNA display CGI


Results 1 - 20 of 271 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6598 3' -54.4 NC_001847.1 + 56478 0.65 0.949222
Target:  5'- gCGUGCGCACGccggcgacgcaggcgCGCgCGaCCGCgccGCCa -3'
miRNA:   3'- -GCACGUGUGCaa-------------GUG-GUaGGCGa--CGG- -5'
6598 3' -54.4 NC_001847.1 + 41378 0.66 0.946176
Target:  5'- --aGCGCACGUcacgcUCGCuCAgCCGCUcCCg -3'
miRNA:   3'- gcaCGUGUGCA-----AGUG-GUaGGCGAcGG- -5'
6598 3' -54.4 NC_001847.1 + 117408 0.66 0.946176
Target:  5'- gGUGCGCGCGguggaCGCUucgcgCgGCUGCg -3'
miRNA:   3'- gCACGUGUGCaa---GUGGua---GgCGACGg -5'
6598 3' -54.4 NC_001847.1 + 113406 0.66 0.946176
Target:  5'- cCGcGCGCGCGggccggCGCCGgcCCGC-GCCc -3'
miRNA:   3'- -GCaCGUGUGCaa----GUGGUa-GGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 62521 0.66 0.946176
Target:  5'- aGUGCgGCACGggCGgCAcgugCCGUgcgGCCa -3'
miRNA:   3'- gCACG-UGUGCaaGUgGUa---GGCGa--CGG- -5'
6598 3' -54.4 NC_001847.1 + 98632 0.66 0.946176
Target:  5'- gCGUGCACAC---CGCCGcUUCGUcGCCc -3'
miRNA:   3'- -GCACGUGUGcaaGUGGU-AGGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 10593 0.66 0.946176
Target:  5'- cCGcGCGCGCGggccggCGCCGgcCCGC-GCCc -3'
miRNA:   3'- -GCaCGUGUGCaa----GUGGUa-GGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 48703 0.66 0.946176
Target:  5'- aCGUGCACGCug-C-CCGcgCCGCgcagcGCCg -3'
miRNA:   3'- -GCACGUGUGcaaGuGGUa-GGCGa----CGG- -5'
6598 3' -54.4 NC_001847.1 + 13101 0.66 0.946176
Target:  5'- --aGUACACGc-CGCCGUCCuccucgGCUGCg -3'
miRNA:   3'- gcaCGUGUGCaaGUGGUAGG------CGACGg -5'
6598 3' -54.4 NC_001847.1 + 65795 0.66 0.941619
Target:  5'- --cGCGCGCGccagCACCAg-CGCcGCCa -3'
miRNA:   3'- gcaCGUGUGCaa--GUGGUagGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 31766 0.66 0.941619
Target:  5'- gCGUGCACccGCGcgCGCCggCCaacacggcCUGCCu -3'
miRNA:   3'- -GCACGUG--UGCaaGUGGuaGGc-------GACGG- -5'
6598 3' -54.4 NC_001847.1 + 81865 0.66 0.941619
Target:  5'- --aGCGCGCGUUCGUCGgacucggCCGCgcgGUCg -3'
miRNA:   3'- gcaCGUGUGCAAGUGGUa------GGCGa--CGG- -5'
6598 3' -54.4 NC_001847.1 + 43478 0.66 0.941619
Target:  5'- --aGCGCGCGaUCGcguCCcgCCGCgccGCCg -3'
miRNA:   3'- gcaCGUGUGCaAGU---GGuaGGCGa--CGG- -5'
6598 3' -54.4 NC_001847.1 + 92420 0.66 0.941619
Target:  5'- --cGCccGCGCGgcCGCCcgCCGC-GCCa -3'
miRNA:   3'- gcaCG--UGUGCaaGUGGuaGGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 30788 0.66 0.941619
Target:  5'- -cUGCggGCGCGgaCGCCG-CCGCgucUGCCg -3'
miRNA:   3'- gcACG--UGUGCaaGUGGUaGGCG---ACGG- -5'
6598 3' -54.4 NC_001847.1 + 128761 0.66 0.941619
Target:  5'- gCG-GCGCuuGc-CGCCuUCUGCUGCCg -3'
miRNA:   3'- -GCaCGUGugCaaGUGGuAGGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 97908 0.66 0.941619
Target:  5'- --aGCGCGcCGUcCGCCgggucGUCCGCgccGCCg -3'
miRNA:   3'- gcaCGUGU-GCAaGUGG-----UAGGCGa--CGG- -5'
6598 3' -54.4 NC_001847.1 + 46546 0.66 0.941619
Target:  5'- --cGCGCGCGaggUCcuCCAgCCGCgcgGCCg -3'
miRNA:   3'- gcaCGUGUGCa--AGu-GGUaGGCGa--CGG- -5'
6598 3' -54.4 NC_001847.1 + 81390 0.66 0.941619
Target:  5'- gGUGCGCAC--UCGCa----GCUGCCg -3'
miRNA:   3'- gCACGUGUGcaAGUGguaggCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 67065 0.66 0.941619
Target:  5'- --cGCGCcgcgGCGUUCGCCccgCCGCaggcgcGCCg -3'
miRNA:   3'- gcaCGUG----UGCAAGUGGua-GGCGa-----CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.