miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6613 5' -60 NC_001847.1 + 59718 0.66 0.72308
Target:  5'- cCGcGGUCgcgauCGCGCUCGgCGuCCGGc -3'
miRNA:   3'- uGCaCCAGau---GCGCGAGCgGC-GGCUu -5'
6613 5' -60 NC_001847.1 + 19899 0.66 0.72308
Target:  5'- cGCGaGGUagaaGCGCacgagggcgUCGCCGCCGAc -3'
miRNA:   3'- -UGCaCCAgaugCGCG---------AGCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 70293 0.66 0.72308
Target:  5'- gGCGgGGUCgcgGCGCGCcgCGCUggucucggaGCUGAAg -3'
miRNA:   3'- -UGCaCCAGa--UGCGCGa-GCGG---------CGGCUU- -5'
6613 5' -60 NC_001847.1 + 90844 0.66 0.72308
Target:  5'- gGCGcUGGcccgccgCgcCGCGCcgCGCCGCCGGu -3'
miRNA:   3'- -UGC-ACCa------GauGCGCGa-GCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 22089 0.66 0.72308
Target:  5'- gACGUGcGcCgACGCGCUgcggcUGCUGCCGGc -3'
miRNA:   3'- -UGCAC-CaGaUGCGCGA-----GCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 130499 0.66 0.72308
Target:  5'- cGCGUcGGgCUgagGCGCGCgagCGCCGgCGGg -3'
miRNA:   3'- -UGCA-CCaGA---UGCGCGa--GCGGCgGCUu -5'
6613 5' -60 NC_001847.1 + 131761 0.66 0.72308
Target:  5'- uGCGgagGGcUUUGCGCgGCUCGgCGCgCGGAu -3'
miRNA:   3'- -UGCa--CC-AGAUGCG-CGAGCgGCG-GCUU- -5'
6613 5' -60 NC_001847.1 + 99247 0.66 0.72308
Target:  5'- cGCGccGUCccACGcCGC-CGCCGCCGAc -3'
miRNA:   3'- -UGCacCAGa-UGC-GCGaGCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 27686 0.66 0.72308
Target:  5'- cGCGUcGGgCUgagGCGCGCgagCGCCGgCGGg -3'
miRNA:   3'- -UGCA-CCaGA---UGCGCGa--GCGGCgGCUu -5'
6613 5' -60 NC_001847.1 + 16078 0.66 0.72308
Target:  5'- cCGUGGcguUgUACGCGCgCGCgUGCCGGc -3'
miRNA:   3'- uGCACC---AgAUGCGCGaGCG-GCGGCUu -5'
6613 5' -60 NC_001847.1 + 99191 0.66 0.72308
Target:  5'- uCGUGGUCcuCGCGCgaggCGgCCGCgCGGc -3'
miRNA:   3'- uGCACCAGauGCGCGa---GC-GGCG-GCUu -5'
6613 5' -60 NC_001847.1 + 16137 0.66 0.717208
Target:  5'- uGCG-GGUCUGCGaucaGCgccagcaugucgcaCGCCGCCGc- -3'
miRNA:   3'- -UGCaCCAGAUGCg---CGa-------------GCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 72976 0.66 0.71328
Target:  5'- gGCGUGGgCUACacgGCGgcCUaCGCCGCCGc- -3'
miRNA:   3'- -UGCACCaGAUG---CGC--GA-GCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 33793 0.66 0.71328
Target:  5'- cGCGgGG-CUGCGCGCggCGCCcggcgcGCUGGAg -3'
miRNA:   3'- -UGCaCCaGAUGCGCGa-GCGG------CGGCUU- -5'
6613 5' -60 NC_001847.1 + 96341 0.66 0.71328
Target:  5'- gGCGgcgGG-CUgGCGUGCgacgCGCUGCCGGc -3'
miRNA:   3'- -UGCa--CCaGA-UGCGCGa---GCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 81282 0.66 0.71328
Target:  5'- cGCGgcGGUCgGCGcCGCcagCGCCGCCa-- -3'
miRNA:   3'- -UGCa-CCAGaUGC-GCGa--GCGGCGGcuu -5'
6613 5' -60 NC_001847.1 + 134639 0.66 0.703412
Target:  5'- cGCGgacaggggGGUUgGCGCGCggccgcccCGCCGCCGc- -3'
miRNA:   3'- -UGCa-------CCAGaUGCGCGa-------GCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 52808 0.66 0.703412
Target:  5'- gGCGgGG-CUAUagGuCGCUCGUCGCCGGc -3'
miRNA:   3'- -UGCaCCaGAUG--C-GCGAGCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 31826 0.66 0.703412
Target:  5'- cGCGgacaggggGGUUgGCGCGCggccgcccCGCCGCCGc- -3'
miRNA:   3'- -UGCa-------CCAGaUGCGCGa-------GCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 33854 0.66 0.694481
Target:  5'- aGCGcagaGGaCUGCGCGCgcuucuugcaggaggCGCCGCCGc- -3'
miRNA:   3'- -UGCa---CCaGAUGCGCGa--------------GCGGCGGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.