miRNA display CGI


Results 1 - 20 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6632 3' -65.5 NC_001847.1 + 62450 0.65 0.480939
Target:  5'- cGGGCGGcCGCUCUcccCGGCCUcagcagggccggggUCGCCGg -3'
miRNA:   3'- -CUUGCC-GCGGGAcc-GCCGGG--------------AGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 5364 0.66 0.474678
Target:  5'- -cGCGGCcggGCCCaggcuccGGCGGUCCgagCgGCCGg -3'
miRNA:   3'- cuUGCCG---CGGGa------CCGCCGGGa--G-CGGC- -5'
6632 3' -65.5 NC_001847.1 + 98971 0.66 0.474678
Target:  5'- -cACGGCGUaggGGuUGGCCCaguacgucUCGCCGg -3'
miRNA:   3'- cuUGCCGCGggaCC-GCCGGG--------AGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 132966 0.66 0.474678
Target:  5'- -cACGcCGCCCaGGCGGCgCgggCGCUGc -3'
miRNA:   3'- cuUGCcGCGGGaCCGCCGgGa--GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 2992 0.66 0.474678
Target:  5'- -cGCGGCcccaCCCUGcGCGGCagcagCGCCGc -3'
miRNA:   3'- cuUGCCGc---GGGAC-CGCCGgga--GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 117450 0.66 0.474678
Target:  5'- -uGCGGCguggccgacaacGCCaCUGGCGGUgCgCGCCu -3'
miRNA:   3'- cuUGCCG------------CGG-GACCGCCGgGaGCGGc -5'
6632 3' -65.5 NC_001847.1 + 123074 0.66 0.474678
Target:  5'- -cGCGGCGCUCc-GCGGCCUcggCGuCCGc -3'
miRNA:   3'- cuUGCCGCGGGacCGCCGGGa--GC-GGC- -5'
6632 3' -65.5 NC_001847.1 + 99344 0.66 0.474678
Target:  5'- gGGugGGCGgCCgGGCGGaUCUUgGCCc -3'
miRNA:   3'- -CUugCCGCgGGaCCGCC-GGGAgCGGc -5'
6632 3' -65.5 NC_001847.1 + 102581 0.66 0.474678
Target:  5'- --uUGGCGUCCgccaGGUcGCCCagCGCCGa -3'
miRNA:   3'- cuuGCCGCGGGa---CCGcCGGGa-GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 91606 0.66 0.474678
Target:  5'- -cGCGGCGCCgugUUGGCcgcgaggaaGCCCgcgcgCGCCGc -3'
miRNA:   3'- cuUGCCGCGG---GACCGc--------CGGGa----GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 125391 0.66 0.474678
Target:  5'- aAGCgGGCGCCCcggGGCaGGgCC-CGCCc -3'
miRNA:   3'- cUUG-CCGCGGGa--CCG-CCgGGaGCGGc -5'
6632 3' -65.5 NC_001847.1 + 67183 0.66 0.474678
Target:  5'- cGGCGGCGaccCCCUGccGCGGCUgUgUGCCGu -3'
miRNA:   3'- cUUGCCGC---GGGAC--CGCCGGgA-GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 22578 0.66 0.474678
Target:  5'- aAGCgGGCGCCCcggGGCaGGgCC-CGCCc -3'
miRNA:   3'- cUUG-CCGCGGGa--CCG-CCgGGaGCGGc -5'
6632 3' -65.5 NC_001847.1 + 54026 0.66 0.474678
Target:  5'- cGAGCuGCaGUUCUGGauGUCCUCGUCGg -3'
miRNA:   3'- -CUUGcCG-CGGGACCgcCGGGAGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 39487 0.66 0.474678
Target:  5'- ----cGCGCCagaGCGGCCCgCGCCGc -3'
miRNA:   3'- cuugcCGCGGgacCGCCGGGaGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 67440 0.66 0.474678
Target:  5'- -uACGGCGCgCU--CGaGCaCCUCGCCGa -3'
miRNA:   3'- cuUGCCGCGgGAccGC-CG-GGAGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 62005 0.66 0.474678
Target:  5'- aGAGCGGCgcgggGCCCU-GCGGCCguaugcggCUC-CCGg -3'
miRNA:   3'- -CUUGCCG-----CGGGAcCGCCGG--------GAGcGGC- -5'
6632 3' -65.5 NC_001847.1 + 89929 0.66 0.474678
Target:  5'- aGGCcGCGCUCgcGGCGGCgCUCGCg- -3'
miRNA:   3'- cUUGcCGCGGGa-CCGCCGgGAGCGgc -5'
6632 3' -65.5 NC_001847.1 + 14507 0.66 0.474678
Target:  5'- -cGCGGCcaagggaaagacGUCUcGGCGGCgCUCGCUGc -3'
miRNA:   3'- cuUGCCG------------CGGGaCCGCCGgGAGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 5880 0.66 0.474678
Target:  5'- cAGCGcuGCGCgCagGGCGGCCg-CGCCGu -3'
miRNA:   3'- cUUGC--CGCGgGa-CCGCCGGgaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.