miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6632 5' -53.1 NC_001847.1 + 13933 0.66 0.974762
Target:  5'- cGCGACGGCGucaugcgcgagcugcGGCUGCgGcccGUGGGAGc -3'
miRNA:   3'- cCGCUGCUGC---------------UCGGCGgU---UAUCUUCu -5'
6632 5' -53.1 NC_001847.1 + 124706 0.66 0.974762
Target:  5'- gGGCGACGAgacgaaggagacggcCGAgGCCGCgggCGAggcggagAGAGGAc -3'
miRNA:   3'- -CCGCUGCU---------------GCU-CGGCG---GUUa------UCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 56043 0.66 0.973693
Target:  5'- cGCGACGACGAccccugggaggcGCCGCU----GAAGc -3'
miRNA:   3'- cCGCUGCUGCU------------CGGCGGuuauCUUCu -5'
6632 5' -53.1 NC_001847.1 + 27744 0.66 0.973693
Target:  5'- cGCGGCGGCG-GuuGCgGcgGGggGc -3'
miRNA:   3'- cCGCUGCUGCuCggCGgUuaUCuuCu -5'
6632 5' -53.1 NC_001847.1 + 131925 0.66 0.973693
Target:  5'- gGGCGGCGcGCGAGCgGCUgcgcGAgcUGGcGGAc -3'
miRNA:   3'- -CCGCUGC-UGCUCGgCGG----UU--AUCuUCU- -5'
6632 5' -53.1 NC_001847.1 + 33849 0.66 0.973693
Target:  5'- cGCGGCGGgaGAGaCCGCgGGcUGGggGGc -3'
miRNA:   3'- cCGCUGCUg-CUC-GGCGgUU-AUCuuCU- -5'
6632 5' -53.1 NC_001847.1 + 35330 0.66 0.973693
Target:  5'- gGGCGuGCGccugGAGCUGCCGAgcGAGGc -3'
miRNA:   3'- -CCGC-UGCug--CUCGGCGGUUauCUUCu -5'
6632 5' -53.1 NC_001847.1 + 34817 0.66 0.973693
Target:  5'- uGGCG-CGGCaGGCCGaCCGGgcgcUGGAGGc -3'
miRNA:   3'- -CCGCuGCUGcUCGGC-GGUU----AUCUUCu -5'
6632 5' -53.1 NC_001847.1 + 14301 0.66 0.973693
Target:  5'- uGGCGugGcCG-GCCGCCucucGggGc -3'
miRNA:   3'- -CCGCugCuGCuCGGCGGuuauCuuCu -5'
6632 5' -53.1 NC_001847.1 + 13071 0.66 0.973693
Target:  5'- cGGCGucgcCGAUGAGCCgGUCGuacaGGAAGu -3'
miRNA:   3'- -CCGCu---GCUGCUCGG-CGGUua--UCUUCu -5'
6632 5' -53.1 NC_001847.1 + 56623 0.66 0.973693
Target:  5'- cGGCGACaccagccgcGCGAGCaGCCGGccGAGGGu -3'
miRNA:   3'- -CCGCUGc--------UGCUCGgCGGUUauCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 29112 0.66 0.973693
Target:  5'- gGGCGGCGcGCGAGCgGCUgcgcGAgcUGGcGGAc -3'
miRNA:   3'- -CCGCUGC-UGCUCGgCGG----UU--AUCuUCU- -5'
6632 5' -53.1 NC_001847.1 + 69975 0.66 0.973693
Target:  5'- cGCGcGCGAUGGGCCacauCCGGUGGAc-- -3'
miRNA:   3'- cCGC-UGCUGCUCGGc---GGUUAUCUucu -5'
6632 5' -53.1 NC_001847.1 + 28625 0.66 0.972027
Target:  5'- cGCGGCGGCcgcgGGGCCcgcggccguguucguGCCGgagAUGGggGAc -3'
miRNA:   3'- cCGCUGCUG----CUCGG---------------CGGU---UAUCuuCU- -5'
6632 5' -53.1 NC_001847.1 + 131438 0.66 0.972027
Target:  5'- cGCGGCGGCcgcgGGGCCcgcggccguguucguGCCGgagAUGGggGAc -3'
miRNA:   3'- cCGCUGCUG----CUCGG---------------CGGU---UAUCuuCU- -5'
6632 5' -53.1 NC_001847.1 + 86239 0.66 0.970875
Target:  5'- cGCGugGACGAGgaGCUGcUGGgcGAc -3'
miRNA:   3'- cCGCugCUGCUCggCGGUuAUCuuCU- -5'
6632 5' -53.1 NC_001847.1 + 51418 0.66 0.970875
Target:  5'- cGGCGGCgcaGACgGAGCCGCCcgcgcgcgacAUGGAcGGc -3'
miRNA:   3'- -CCGCUG---CUG-CUCGGCGGu---------UAUCUuCU- -5'
6632 5' -53.1 NC_001847.1 + 132766 0.66 0.970875
Target:  5'- aGGCGcCGGCGAaaaGCCGCCGc------- -3'
miRNA:   3'- -CCGCuGCUGCU---CGGCGGUuaucuucu -5'
6632 5' -53.1 NC_001847.1 + 29953 0.66 0.970875
Target:  5'- aGGCGcCGGCGAaaaGCCGCCGc------- -3'
miRNA:   3'- -CCGCuGCUGCU---CGGCGGUuaucuucu -5'
6632 5' -53.1 NC_001847.1 + 100558 0.66 0.970875
Target:  5'- cGGCcGCGGCGAuuauuGCCGCCAGg------ -3'
miRNA:   3'- -CCGcUGCUGCU-----CGGCGGUUaucuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.