miRNA display CGI


Results 1 - 20 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6646 3' -62.2 NC_001847.1 + 16464 0.66 0.642278
Target:  5'- gGCuGCGGcccggcccaacccccGCCCUGCcuGGGUGGGGCACu -3'
miRNA:   3'- aCG-CGCU---------------CGGGGUG--CUCGCCCUGUGc -5'
6646 3' -62.2 NC_001847.1 + 77094 0.66 0.642278
Target:  5'- aGCGCGAGCUgcgucagccgggucgCCAgcAGCGGGcCGCc -3'
miRNA:   3'- aCGCGCUCGG---------------GGUgcUCGCCCuGUGc -5'
6646 3' -62.2 NC_001847.1 + 58720 0.66 0.638335
Target:  5'- cGCGCGcGCuCCCGCc-GCGGGGugcccccgcCGCGg -3'
miRNA:   3'- aCGCGCuCG-GGGUGcuCGCCCU---------GUGC- -5'
6646 3' -62.2 NC_001847.1 + 71954 0.66 0.638335
Target:  5'- cGCGCGGGCUcggCCAUGGcGCGcGAcCGCGa -3'
miRNA:   3'- aCGCGCUCGG---GGUGCU-CGCcCU-GUGC- -5'
6646 3' -62.2 NC_001847.1 + 69421 0.66 0.638335
Target:  5'- aGCGCc-GCCCCgGCGGGCucuGGGAUgaACGc -3'
miRNA:   3'- aCGCGcuCGGGG-UGCUCG---CCCUG--UGC- -5'
6646 3' -62.2 NC_001847.1 + 1091 0.66 0.638335
Target:  5'- cGC-CGGGCgCCGCGGccGCGGGcgGCGCc -3'
miRNA:   3'- aCGcGCUCGgGGUGCU--CGCCC--UGUGc -5'
6646 3' -62.2 NC_001847.1 + 101842 0.66 0.638335
Target:  5'- gUGCGcCGuugcGCCugCCGCGAGCaGGuCGCGg -3'
miRNA:   3'- -ACGC-GCu---CGG--GGUGCUCGcCCuGUGC- -5'
6646 3' -62.2 NC_001847.1 + 73091 0.66 0.638335
Target:  5'- cGCGCGcauccGGCCCauUGAGgccCGGGugGCGg -3'
miRNA:   3'- aCGCGC-----UCGGGguGCUC---GCCCugUGC- -5'
6646 3' -62.2 NC_001847.1 + 75131 0.66 0.638334
Target:  5'- gGCcCGGGCCCCGC---CGGGGCcgGCGg -3'
miRNA:   3'- aCGcGCUCGGGGUGcucGCCCUG--UGC- -5'
6646 3' -62.2 NC_001847.1 + 43319 0.66 0.638334
Target:  5'- cGCGCGcuGCCgugcugccaucgCCGCGcGGCGGcGACGCc -3'
miRNA:   3'- aCGCGCu-CGG------------GGUGC-UCGCC-CUGUGc -5'
6646 3' -62.2 NC_001847.1 + 24884 0.66 0.638334
Target:  5'- aGCGCGucgacucGUCCCggGCGAGCaGGcCGCGc -3'
miRNA:   3'- aCGCGCu------CGGGG--UGCUCGcCCuGUGC- -5'
6646 3' -62.2 NC_001847.1 + 77526 0.66 0.638334
Target:  5'- cGCGCGuG-CCUGCGAGCGcgaGGGCGUGg -3'
miRNA:   3'- aCGCGCuCgGGGUGCUCGC---CCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 75364 0.66 0.638334
Target:  5'- aGCGCGu-CUCgGCGGGCauGGGCACGg -3'
miRNA:   3'- aCGCGCucGGGgUGCUCGc-CCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 103904 0.66 0.638334
Target:  5'- cGC-CGGGCgCCGCGGccGCGGGcgGCGCc -3'
miRNA:   3'- aCGcGCUCGgGGUGCU--CGCCC--UGUGc -5'
6646 3' -62.2 NC_001847.1 + 32943 0.66 0.638334
Target:  5'- cGCGCGcGGUgCCCGCGgacAGCGcGGugGCc -3'
miRNA:   3'- aCGCGC-UCG-GGGUGC---UCGC-CCugUGc -5'
6646 3' -62.2 NC_001847.1 + 96354 0.66 0.638334
Target:  5'- cGUGCGAcGCgCUGCcGGCaGGGACGCu -3'
miRNA:   3'- aCGCGCU-CGgGGUGcUCG-CCCUGUGc -5'
6646 3' -62.2 NC_001847.1 + 7256 0.66 0.638334
Target:  5'- cUGUGCGGGCgCgGCGGG-GGcACGCGa -3'
miRNA:   3'- -ACGCGCUCGgGgUGCUCgCCcUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 12431 0.66 0.628473
Target:  5'- aGUGCGGGCUCCAa-GGCGccGGCACa -3'
miRNA:   3'- aCGCGCUCGGGGUgcUCGCc-CUGUGc -5'
6646 3' -62.2 NC_001847.1 + 107439 0.66 0.628473
Target:  5'- gGCGCGGGCggCCCGCcGGCGcucGCGCGc -3'
miRNA:   3'- aCGCGCUCG--GGGUGcUCGCcc-UGUGC- -5'
6646 3' -62.2 NC_001847.1 + 4626 0.66 0.628473
Target:  5'- gGCGCGGGCggCCCGCcGGCGcucGCGCGc -3'
miRNA:   3'- aCGCGCUCG--GGGUGcUCGCcc-UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.