miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6646 5' -51.3 NC_001847.1 + 117237 0.66 0.986043
Target:  5'- cGGCAcc--UUGGCCGCcgucgcccuaauccuGCUCUGCGGg -3'
miRNA:   3'- -UCGUauauAAUCGGCG---------------UGAGGCGCUg -5'
6646 5' -51.3 NC_001847.1 + 120113 0.66 0.985511
Target:  5'- cAGCucgcccggcGGCCGCgGCUCgCGCGGCc -3'
miRNA:   3'- -UCGuauauaa--UCGGCG-UGAG-GCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 13130 0.66 0.98533
Target:  5'- gGGCGgc-----GCCGCGCcgccugCCGCGGCc -3'
miRNA:   3'- -UCGUauauaauCGGCGUGa-----GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 54127 0.66 0.98533
Target:  5'- cGCAgcacc-GGCUGCAaguggCCGCGGCg -3'
miRNA:   3'- uCGUauauaaUCGGCGUga---GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 4377 0.66 0.98533
Target:  5'- cGCGaccgcgAGCgCGCGCgCCGCGGCc -3'
miRNA:   3'- uCGUauauaaUCG-GCGUGaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 47866 0.66 0.98533
Target:  5'- cGCGggccGUcGGCgCGCACgUCCGCGAg -3'
miRNA:   3'- uCGUaua-UAaUCG-GCGUG-AGGCGCUg -5'
6646 5' -51.3 NC_001847.1 + 121045 0.66 0.98533
Target:  5'- uGCGgGUGguccGCCaGCGcCUCCGCGAUg -3'
miRNA:   3'- uCGUaUAUaau-CGG-CGU-GAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 127274 0.66 0.98533
Target:  5'- uGGUuuUGUGgcGGCCGC-CUCUGCaGGCg -3'
miRNA:   3'- -UCGu-AUAUaaUCGGCGuGAGGCG-CUG- -5'
6646 5' -51.3 NC_001847.1 + 65902 0.66 0.98533
Target:  5'- cGCGUAgua-GGCCaGCGuugCCGCGGCg -3'
miRNA:   3'- uCGUAUauaaUCGG-CGUga-GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 2362 0.66 0.98533
Target:  5'- cGCAUGagGUccAGUCGCGCgcCCGCGAa -3'
miRNA:   3'- uCGUAUa-UAa-UCGGCGUGa-GGCGCUg -5'
6646 5' -51.3 NC_001847.1 + 30546 0.66 0.98533
Target:  5'- cGCcgAgcuc-GUCGCgcgGCUCCGCGGCg -3'
miRNA:   3'- uCGuaUauaauCGGCG---UGAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 77046 0.66 0.98533
Target:  5'- cGCAgaaGUAgUAGCgGCGCggcacccgCUGCGGCg -3'
miRNA:   3'- uCGUa--UAUaAUCGgCGUGa-------GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 4169 0.66 0.98533
Target:  5'- gAGCGggccuUGUUuugGGCCGCGCgcccgugggCCGCGcGCa -3'
miRNA:   3'- -UCGUau---AUAA---UCGGCGUGa--------GGCGC-UG- -5'
6646 5' -51.3 NC_001847.1 + 129785 0.66 0.98533
Target:  5'- gAGCcUGggcccGGCCGCGC-CgCGCGACc -3'
miRNA:   3'- -UCGuAUauaa-UCGGCGUGaG-GCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 107190 0.66 0.98533
Target:  5'- cGCGaccgcgAGCgCGCGCgCCGCGGCc -3'
miRNA:   3'- uCGUauauaaUCG-GCGUGaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 58089 0.66 0.984964
Target:  5'- cGCAgcgggu-GCCGCGCcgcuacuacuUCUGCGGCg -3'
miRNA:   3'- uCGUauauaauCGGCGUG----------AGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 68443 0.66 0.98459
Target:  5'- aAGCGgccgcagaGGuCCGCGC-CCGCGGCc -3'
miRNA:   3'- -UCGUauauaa--UC-GGCGUGaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 27327 0.66 0.98421
Target:  5'- cGCGccgccgccGCCGCGCUuugCCGCGGCc -3'
miRNA:   3'- uCGUauauaau-CGGCGUGA---GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 130140 0.66 0.98421
Target:  5'- cGCGccgccgccGCCGCGCUuugCCGCGGCc -3'
miRNA:   3'- uCGUauauaau-CGGCGUGA---GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 54552 0.66 0.983626
Target:  5'- gGGCGgggaagacgcAGUCGCGC-CCGUGACg -3'
miRNA:   3'- -UCGUauauaa----UCGGCGUGaGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.