miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6650 3' -56 NC_001847.1 + 56587 0.66 0.929023
Target:  5'- --gGUgACGCGaacggcaGCGCCGGGACuCGCGu -3'
miRNA:   3'- gagCA-UGUGCa------UGUGGCCCUG-GCGCc -5'
6650 3' -56 NC_001847.1 + 79193 0.66 0.929023
Target:  5'- gUCGcGCGgGUGCGCauucuGGGcucgcgacgccgGCCGCGGa -3'
miRNA:   3'- gAGCaUGUgCAUGUGg----CCC------------UGGCGCC- -5'
6650 3' -56 NC_001847.1 + 47545 0.66 0.929023
Target:  5'- aCUCcaGCACGgcggGCGCgGGGAgcCCgGCGGc -3'
miRNA:   3'- -GAGcaUGUGCa---UGUGgCCCU--GG-CGCC- -5'
6650 3' -56 NC_001847.1 + 16178 0.66 0.929023
Target:  5'- gCUCGU-CGCGUagcGCACCucgacGGGcuGCuCGCGGc -3'
miRNA:   3'- -GAGCAuGUGCA---UGUGG-----CCC--UG-GCGCC- -5'
6650 3' -56 NC_001847.1 + 38122 0.66 0.929023
Target:  5'- -cCG-GCGgGUGCGCCGGGcACCgagucuucgcGCGGc -3'
miRNA:   3'- gaGCaUGUgCAUGUGGCCC-UGG----------CGCC- -5'
6650 3' -56 NC_001847.1 + 36815 0.66 0.929023
Target:  5'- uUCGUGCGCcaccggcGCGCCgacugGGGGCUgGCGGa -3'
miRNA:   3'- gAGCAUGUGca-----UGUGG-----CCCUGG-CGCC- -5'
6650 3' -56 NC_001847.1 + 77704 0.66 0.923758
Target:  5'- -gCGUGCGCGcGCGCgCuGGugCGCGc -3'
miRNA:   3'- gaGCAUGUGCaUGUG-GcCCugGCGCc -5'
6650 3' -56 NC_001847.1 + 15545 0.66 0.923758
Target:  5'- cCUCGU---CGU-CGCCGGGuGgCGCGGg -3'
miRNA:   3'- -GAGCAuguGCAuGUGGCCC-UgGCGCC- -5'
6650 3' -56 NC_001847.1 + 29215 0.66 0.923758
Target:  5'- --gGUGCucuCGgcCGCgGcGGGCCGCGGc -3'
miRNA:   3'- gagCAUGu--GCauGUGgC-CCUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 127315 0.66 0.923758
Target:  5'- -cCGgagACACGgcgaccgGCGCCGaGGcggccggcuGCCGCGGc -3'
miRNA:   3'- gaGCa--UGUGCa------UGUGGC-CC---------UGGCGCC- -5'
6650 3' -56 NC_001847.1 + 15085 0.66 0.923758
Target:  5'- aUCGccUGCG-GCAgCGGGGCCGCGc -3'
miRNA:   3'- gAGCauGUGCaUGUgGCCCUGGCGCc -5'
6650 3' -56 NC_001847.1 + 56799 0.66 0.923758
Target:  5'- uUCGUcgcgcuCACGgggccggcGCGCCuGGGGgCGCGGg -3'
miRNA:   3'- gAGCAu-----GUGCa-------UGUGG-CCCUgGCGCC- -5'
6650 3' -56 NC_001847.1 + 132028 0.66 0.923758
Target:  5'- --gGUGCucuCGgcCGCgGcGGGCCGCGGc -3'
miRNA:   3'- gagCAUGu--GCauGUGgC-CCUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 116462 0.66 0.923758
Target:  5'- -gCGgGC-CGUGCugCGGGGCCucGCGu -3'
miRNA:   3'- gaGCaUGuGCAUGugGCCCUGG--CGCc -5'
6650 3' -56 NC_001847.1 + 46200 0.66 0.923758
Target:  5'- -gCGgccgGCgGCGgccgcCGCCGGGccgGCCGCGGg -3'
miRNA:   3'- gaGCa---UG-UGCau---GUGGCCC---UGGCGCC- -5'
6650 3' -56 NC_001847.1 + 37711 0.66 0.918261
Target:  5'- -aCGUGCGCGcUGCugCuGGGCgCGCcGGu -3'
miRNA:   3'- gaGCAUGUGC-AUGugGcCCUG-GCG-CC- -5'
6650 3' -56 NC_001847.1 + 46915 0.66 0.918261
Target:  5'- uUCGggggGCGCGUcgggcccggGCuCCGGG-CCGCGu -3'
miRNA:   3'- gAGCa---UGUGCA---------UGuGGCCCuGGCGCc -5'
6650 3' -56 NC_001847.1 + 104342 0.66 0.918261
Target:  5'- cCUCGgcgcGCGCGaagGCGcCCGGGccgaagacgcGCCGCGa -3'
miRNA:   3'- -GAGCa---UGUGCa--UGU-GGCCC----------UGGCGCc -5'
6650 3' -56 NC_001847.1 + 82470 0.66 0.918261
Target:  5'- -gCGUGCgGCGUGCcgUGGGAcgagcCCGCGGc -3'
miRNA:   3'- gaGCAUG-UGCAUGugGCCCU-----GGCGCC- -5'
6650 3' -56 NC_001847.1 + 49896 0.66 0.918261
Target:  5'- -aCG-GCACGU--GCUGGGcccgGCCGCGGu -3'
miRNA:   3'- gaGCaUGUGCAugUGGCCC----UGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.