Results 1 - 20 of 355 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6651 | 3' | -61.3 | NC_001847.1 | + | 68329 | 0.66 | 0.638812 |
Target: 5'- aGGUg-CAGaACGCGCCGCUcGGCg- -3' miRNA: 3'- cCCAagGUCgUGCGCGGCGGuCCGaa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 13361 | 0.66 | 0.638812 |
Target: 5'- aGGacgcUCCAGCcgcgaacgGCGCGCaCGuCCGGGCg- -3' miRNA: 3'- cCCa---AGGUCG--------UGCGCG-GC-GGUCCGaa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 116345 | 0.66 | 0.638812 |
Target: 5'- -cGcgCUGGCGCGCGCCGCCgccgcGGaGCUc -3' miRNA: 3'- ccCaaGGUCGUGCGCGGCGG-----UC-CGAa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 85030 | 0.66 | 0.638812 |
Target: 5'- aGGccagCCGGCGCucuaCGCCGCCcGGCg- -3' miRNA: 3'- cCCaa--GGUCGUGc---GCGGCGGuCCGaa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 5338 | 0.66 | 0.638812 |
Target: 5'- cGGUUCaCGuaguacuggucGCGCgGCGCgGCCGGGCc- -3' miRNA: 3'- cCCAAG-GU-----------CGUG-CGCGgCGGUCCGaa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 115891 | 0.66 | 0.638812 |
Target: 5'- ----gCCGGCuCGCGCCGCUuGGCc- -3' miRNA: 3'- cccaaGGUCGuGCGCGGCGGuCCGaa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 54802 | 0.66 | 0.638812 |
Target: 5'- cGGGUacugCgAGCugGCGCCGCUGuuugccgccacGGCc- -3' miRNA: 3'- -CCCAa---GgUCGugCGCGGCGGU-----------CCGaa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 30756 | 0.66 | 0.638812 |
Target: 5'- cGGcGcgCUGGCGCGCGCCGUgCuGGCc- -3' miRNA: 3'- -CC-CaaGGUCGUGCGCGGCG-GuCCGaa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 63738 | 0.66 | 0.638812 |
Target: 5'- cGG--CCgAGCAacaGCGCCGCCuGGCg- -3' miRNA: 3'- cCCaaGG-UCGUg--CGCGGCGGuCCGaa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 122923 | 0.66 | 0.638812 |
Target: 5'- cGGGUgu--GCGCGCGCCGCgCAaGCc- -3' miRNA: 3'- -CCCAagguCGUGCGCGGCG-GUcCGaa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 86503 | 0.66 | 0.638812 |
Target: 5'- cGGGggCggCGGCGCccCGCCGCCGcGGCg- -3' miRNA: 3'- -CCCaaG--GUCGUGc-GCGGCGGU-CCGaa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 5658 | 0.66 | 0.638812 |
Target: 5'- ---gUCCAGCggauGCGCGCCGUCGcgcgcGGCg- -3' miRNA: 3'- cccaAGGUCG----UGCGCGGCGGU-----CCGaa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 57631 | 0.66 | 0.638812 |
Target: 5'- aGGGcucgccaacuucUUUCAGgGCcuggGCGCCGUCGGGCa- -3' miRNA: 3'- -CCC------------AAGGUCgUG----CGCGGCGGUCCGaa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 38042 | 0.66 | 0.638812 |
Target: 5'- ---cUCgCGGCcaacCGCGCCGCCGcGGCUa -3' miRNA: 3'- cccaAG-GUCGu---GCGCGGCGGU-CCGAa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 133569 | 0.66 | 0.638812 |
Target: 5'- cGGcGcgCUGGCGCGCGCCGUgCuGGCc- -3' miRNA: 3'- -CC-CaaGGUCGUGCGCGGCG-GuCCGaa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 67407 | 0.66 | 0.638812 |
Target: 5'- -uGcgCCGGCGCGUguGCCgagagGCCAGGCUc -3' miRNA: 3'- ccCaaGGUCGUGCG--CGG-----CGGUCCGAa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 103392 | 0.66 | 0.637804 |
Target: 5'- cGGGUgcacgCUgacCACGCGCCGCUcgacauaGGGCUc -3' miRNA: 3'- -CCCAa----GGuc-GUGCGCGGCGG-------UCCGAa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 39353 | 0.66 | 0.632764 |
Target: 5'- uGGGcacgUCCAGCgucgacagcagcuccGCGaCGCCGUCGGGg-- -3' miRNA: 3'- -CCCa---AGGUCG---------------UGC-GCGGCGGUCCgaa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 60245 | 0.66 | 0.628732 |
Target: 5'- aGGG--CUAGCACgGCGCCGacuucgCAGGCg- -3' miRNA: 3'- -CCCaaGGUCGUG-CGCGGCg-----GUCCGaa -5' |
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6651 | 3' | -61.3 | NC_001847.1 | + | 131889 | 0.66 | 0.628732 |
Target: 5'- cGGcgCCGGCGCcccUGCCGCC-GGCg- -3' miRNA: 3'- cCCaaGGUCGUGc--GCGGCGGuCCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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