miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6651 3' -61.3 NC_001847.1 + 67407 0.66 0.638812
Target:  5'- -uGcgCCGGCGCGUguGCCgagagGCCAGGCUc -3'
miRNA:   3'- ccCaaGGUCGUGCG--CGG-----CGGUCCGAa -5'
6651 3' -61.3 NC_001847.1 + 85030 0.66 0.638812
Target:  5'- aGGccagCCGGCGCucuaCGCCGCCcGGCg- -3'
miRNA:   3'- cCCaa--GGUCGUGc---GCGGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 54802 0.66 0.638812
Target:  5'- cGGGUacugCgAGCugGCGCCGCUGuuugccgccacGGCc- -3'
miRNA:   3'- -CCCAa---GgUCGugCGCGGCGGU-----------CCGaa -5'
6651 3' -61.3 NC_001847.1 + 5338 0.66 0.638812
Target:  5'- cGGUUCaCGuaguacuggucGCGCgGCGCgGCCGGGCc- -3'
miRNA:   3'- cCCAAG-GU-----------CGUG-CGCGgCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 30756 0.66 0.638812
Target:  5'- cGGcGcgCUGGCGCGCGCCGUgCuGGCc- -3'
miRNA:   3'- -CC-CaaGGUCGUGCGCGGCG-GuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 38042 0.66 0.638812
Target:  5'- ---cUCgCGGCcaacCGCGCCGCCGcGGCUa -3'
miRNA:   3'- cccaAG-GUCGu---GCGCGGCGGU-CCGAa -5'
6651 3' -61.3 NC_001847.1 + 63738 0.66 0.638812
Target:  5'- cGG--CCgAGCAacaGCGCCGCCuGGCg- -3'
miRNA:   3'- cCCaaGG-UCGUg--CGCGGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 115891 0.66 0.638812
Target:  5'- ----gCCGGCuCGCGCCGCUuGGCc- -3'
miRNA:   3'- cccaaGGUCGuGCGCGGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 13361 0.66 0.638812
Target:  5'- aGGacgcUCCAGCcgcgaacgGCGCGCaCGuCCGGGCg- -3'
miRNA:   3'- cCCa---AGGUCG--------UGCGCG-GC-GGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 5658 0.66 0.638812
Target:  5'- ---gUCCAGCggauGCGCGCCGUCGcgcgcGGCg- -3'
miRNA:   3'- cccaAGGUCG----UGCGCGGCGGU-----CCGaa -5'
6651 3' -61.3 NC_001847.1 + 122923 0.66 0.638812
Target:  5'- cGGGUgu--GCGCGCGCCGCgCAaGCc- -3'
miRNA:   3'- -CCCAagguCGUGCGCGGCG-GUcCGaa -5'
6651 3' -61.3 NC_001847.1 + 86503 0.66 0.638812
Target:  5'- cGGGggCggCGGCGCccCGCCGCCGcGGCg- -3'
miRNA:   3'- -CCCaaG--GUCGUGc-GCGGCGGU-CCGaa -5'
6651 3' -61.3 NC_001847.1 + 68329 0.66 0.638812
Target:  5'- aGGUg-CAGaACGCGCCGCUcGGCg- -3'
miRNA:   3'- cCCAagGUCgUGCGCGGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 133569 0.66 0.638812
Target:  5'- cGGcGcgCUGGCGCGCGCCGUgCuGGCc- -3'
miRNA:   3'- -CC-CaaGGUCGUGCGCGGCG-GuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 57631 0.66 0.638812
Target:  5'- aGGGcucgccaacuucUUUCAGgGCcuggGCGCCGUCGGGCa- -3'
miRNA:   3'- -CCC------------AAGGUCgUG----CGCGGCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 116345 0.66 0.638812
Target:  5'- -cGcgCUGGCGCGCGCCGCCgccgcGGaGCUc -3'
miRNA:   3'- ccCaaGGUCGUGCGCGGCGG-----UC-CGAa -5'
6651 3' -61.3 NC_001847.1 + 103392 0.66 0.637804
Target:  5'- cGGGUgcacgCUgacCACGCGCCGCUcgacauaGGGCUc -3'
miRNA:   3'- -CCCAa----GGuc-GUGCGCGGCGG-------UCCGAa -5'
6651 3' -61.3 NC_001847.1 + 39353 0.66 0.632764
Target:  5'- uGGGcacgUCCAGCgucgacagcagcuccGCGaCGCCGUCGGGg-- -3'
miRNA:   3'- -CCCa---AGGUCG---------------UGC-GCGGCGGUCCgaa -5'
6651 3' -61.3 NC_001847.1 + 131889 0.66 0.628732
Target:  5'- cGGcgCCGGCGCcccUGCCGCC-GGCg- -3'
miRNA:   3'- cCCaaGGUCGUGc--GCGGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 60245 0.66 0.628732
Target:  5'- aGGG--CUAGCACgGCGCCGacuucgCAGGCg- -3'
miRNA:   3'- -CCCaaGGUCGUG-CGCGGCg-----GUCCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.