miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6651 5' -54.1 NC_001847.1 + 42735 0.66 0.947274
Target:  5'- gCGAGUUCGGgcUGGC----GCCCCCCu -3'
miRNA:   3'- gGUUUAAGUC--GCCGcuuaCGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 46869 0.66 0.947274
Target:  5'- ------cCAGCaGGCGAAgcgcuCCCCCCGu -3'
miRNA:   3'- gguuuaaGUCG-CCGCUUac---GGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 17665 0.66 0.947274
Target:  5'- aCGAcgUCGGCGGCucgcgGUCCgCCGg -3'
miRNA:   3'- gGUUuaAGUCGCCGcuua-CGGGgGGU- -5'
6651 5' -54.1 NC_001847.1 + 81536 0.66 0.947274
Target:  5'- gCAuccGUUCGGCGGcCGAGcucgccgGCCCCgCGc -3'
miRNA:   3'- gGUu--UAAGUCGCC-GCUUa------CGGGGgGU- -5'
6651 5' -54.1 NC_001847.1 + 92514 0.66 0.947274
Target:  5'- aCGAcgUCGGCGcUGcc-GCCCCCCu -3'
miRNA:   3'- gGUUuaAGUCGCcGCuuaCGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 44801 0.66 0.942742
Target:  5'- aCGAcggCGGCuuuGGCGGcUGCgCCCCCGg -3'
miRNA:   3'- gGUUuaaGUCG---CCGCUuACG-GGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 60743 0.66 0.942742
Target:  5'- cCCGcgcgcgcgCGGCGGCcgcGcgGUCCCCCAg -3'
miRNA:   3'- -GGUuuaa----GUCGCCGc--UuaCGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 55503 0.66 0.942742
Target:  5'- gCAGugGUUCGGCGGCGAGcGCgUagaCCAc -3'
miRNA:   3'- gGUU--UAAGUCGCCGCUUaCGgGg--GGU- -5'
6651 5' -54.1 NC_001847.1 + 3066 0.66 0.939904
Target:  5'- gCAGGUUgugcucguagugcagCAGC-GCGAugacGCCCCCCAc -3'
miRNA:   3'- gGUUUAA---------------GUCGcCGCUua--CGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 100652 0.66 0.937963
Target:  5'- gCCAGGgccgcgcugCuGCGGCGGggGgUCCCCAg -3'
miRNA:   3'- -GGUUUaa-------GuCGCCGCUuaCgGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 8315 0.66 0.937963
Target:  5'- gCCAGGcugUCGGCaGGaCGAucaGCCCCCgAa -3'
miRNA:   3'- -GGUUUa--AGUCG-CC-GCUua-CGGGGGgU- -5'
6651 5' -54.1 NC_001847.1 + 102706 0.66 0.937963
Target:  5'- gCCGGGcg-GGCGGCGAAaggcccgcaCCCCCCGg -3'
miRNA:   3'- -GGUUUaagUCGCCGCUUac-------GGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 20651 0.66 0.937963
Target:  5'- gCCAAAggggcUCAGCagGGCGGAgacGUCCgCCAg -3'
miRNA:   3'- -GGUUUa----AGUCG--CCGCUUa--CGGGgGGU- -5'
6651 5' -54.1 NC_001847.1 + 39768 0.66 0.937963
Target:  5'- cUCAGAgcCGGCGGCGcGGUccgccgccaGCCCCCg- -3'
miRNA:   3'- -GGUUUaaGUCGCCGC-UUA---------CGGGGGgu -5'
6651 5' -54.1 NC_001847.1 + 47728 0.66 0.937963
Target:  5'- uUCGAGcgCGGCgGGCGGG-GCCCCgCCc -3'
miRNA:   3'- -GGUUUaaGUCG-CCGCUUaCGGGG-GGu -5'
6651 5' -54.1 NC_001847.1 + 33752 0.66 0.937963
Target:  5'- cCCGAuugcCGGCGGCGccgcgggcaGCCCCCgCGg -3'
miRNA:   3'- -GGUUuaa-GUCGCCGCuua------CGGGGG-GU- -5'
6651 5' -54.1 NC_001847.1 + 80740 0.66 0.932936
Target:  5'- gCCAAccgCGGCGGCGcccgccucgcccGcgGCCgCCCGc -3'
miRNA:   3'- -GGUUuaaGUCGCCGC------------UuaCGGgGGGU- -5'
6651 5' -54.1 NC_001847.1 + 107731 0.66 0.932936
Target:  5'- aCCGAccgcgcCGGCGGCaacagcGCCCCCCc -3'
miRNA:   3'- -GGUUuaa---GUCGCCGcuua--CGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 73918 0.66 0.932936
Target:  5'- cCCGAagcGUUCgaGGUGGaGAuuGUGCUCCCCGg -3'
miRNA:   3'- -GGUU---UAAG--UCGCCgCU--UACGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 42988 0.66 0.932936
Target:  5'- cCCGGGUUCGcuGuCGGCGg--GCCCCgCGg -3'
miRNA:   3'- -GGUUUAAGU--C-GCCGCuuaCGGGGgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.