miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6652 3' -57 NC_001847.1 + 134102 0.66 0.870847
Target:  5'- gCGGgagaCgCUCGUGCUgcuGCGGCGC-GCCg -3'
miRNA:   3'- -GCCaca-G-GAGCAUGG---UGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 43531 0.66 0.870847
Target:  5'- gCGGgcuUCCUCGcgGCCaacACGGCGCcGCg -3'
miRNA:   3'- -GCCac-AGGAGCa-UGG---UGUCGCGaCGg -5'
6652 3' -57 NC_001847.1 + 31289 0.66 0.870847
Target:  5'- gCGGgagaCgCUCGUGCUgcuGCGGCGC-GCCg -3'
miRNA:   3'- -GCCaca-G-GAGCAUGG---UGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 107626 0.66 0.870847
Target:  5'- gGGcGUCCcCGccgccGCCGCGGCGgCgGCCg -3'
miRNA:   3'- gCCaCAGGaGCa----UGGUGUCGC-GaCGG- -5'
6652 3' -57 NC_001847.1 + 101797 0.66 0.870847
Target:  5'- ---cG-CCUCGUGCaGCAGCGCcacccagGCCg -3'
miRNA:   3'- gccaCaGGAGCAUGgUGUCGCGa------CGG- -5'
6652 3' -57 NC_001847.1 + 54232 0.66 0.870847
Target:  5'- uGGacUGUCugCUCGUGg-GCAGCGCUGCg -3'
miRNA:   3'- gCC--ACAG--GAGCAUggUGUCGCGACGg -5'
6652 3' -57 NC_001847.1 + 15016 0.66 0.870847
Target:  5'- gCGGUGgggCCgcgCGaGCCGCGGC-C-GCCg -3'
miRNA:   3'- -GCCACa--GGa--GCaUGGUGUCGcGaCGG- -5'
6652 3' -57 NC_001847.1 + 50789 0.66 0.870114
Target:  5'- uCGGcGUCUUCGggACCaugaacagcgcguACAGCGaCUGCg -3'
miRNA:   3'- -GCCaCAGGAGCa-UGG-------------UGUCGC-GACGg -5'
6652 3' -57 NC_001847.1 + 78632 0.66 0.863422
Target:  5'- ---cGUCCUgGUGCUuuuugGCGGCGCgGUCg -3'
miRNA:   3'- gccaCAGGAgCAUGG-----UGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 103320 0.66 0.863422
Target:  5'- aGG-GUCCUCGcacucUGCCcCcGCGCcGCCc -3'
miRNA:   3'- gCCaCAGGAGC-----AUGGuGuCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 17993 0.66 0.863422
Target:  5'- ---cGcUCUCGUGuCCACAGCGCgaaguguggaUGCCa -3'
miRNA:   3'- gccaCaGGAGCAU-GGUGUCGCG----------ACGG- -5'
6652 3' -57 NC_001847.1 + 71583 0.66 0.863422
Target:  5'- aGG-GUCacaGUGCCGCccGGCGCcgGCCc -3'
miRNA:   3'- gCCaCAGgagCAUGGUG--UCGCGa-CGG- -5'
6652 3' -57 NC_001847.1 + 61928 0.66 0.85579
Target:  5'- aGGcGUCgcgaugaaCUCGcagACCGCAGC-CUGCCc -3'
miRNA:   3'- gCCaCAG--------GAGCa--UGGUGUCGcGACGG- -5'
6652 3' -57 NC_001847.1 + 116668 0.66 0.85579
Target:  5'- uGGUGgCCUgCGUGugggUC-CGGCGCUGCg -3'
miRNA:   3'- gCCACaGGA-GCAU----GGuGUCGCGACGg -5'
6652 3' -57 NC_001847.1 + 86659 0.66 0.847959
Target:  5'- aCGGUGcucUUCUCGgagcucGCCGC-GCGCUuuuGCCu -3'
miRNA:   3'- -GCCAC---AGGAGCa-----UGGUGuCGCGA---CGG- -5'
6652 3' -57 NC_001847.1 + 45854 0.66 0.847959
Target:  5'- aCGGccgaggCCUCG-GCCGCGGCGC-GCg -3'
miRNA:   3'- -GCCaca---GGAGCaUGGUGUCGCGaCGg -5'
6652 3' -57 NC_001847.1 + 130915 0.66 0.847959
Target:  5'- gCGGUGcCCUCGggGCCAggaccgaggcCGGCGaCguuggGCCc -3'
miRNA:   3'- -GCCACaGGAGCa-UGGU----------GUCGC-Ga----CGG- -5'
6652 3' -57 NC_001847.1 + 13004 0.66 0.847959
Target:  5'- gGGUGgggggCCU-GUGCCgagcaguagACGGCGCagcaUGCCg -3'
miRNA:   3'- gCCACa----GGAgCAUGG---------UGUCGCG----ACGG- -5'
6652 3' -57 NC_001847.1 + 21864 0.66 0.847959
Target:  5'- aGGUGgug-CGgggGCUGCGGCGCgcUGCCg -3'
miRNA:   3'- gCCACaggaGCa--UGGUGUCGCG--ACGG- -5'
6652 3' -57 NC_001847.1 + 80250 0.66 0.847958
Target:  5'- cCGG-GUCgacggCGUGCCGCAGCaggGCCu -3'
miRNA:   3'- -GCCaCAGga---GCAUGGUGUCGcgaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.