Results 1 - 20 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6653 | 3' | -59.7 | NC_001847.1 | + | 85059 | 0.65 | 0.753369 |
Target: 5'- gGCCGagcaUCaGGGGCgCGGugccaauGAUCAGCGCc- -3' miRNA: 3'- -CGGCg---AG-CCCCG-GUU-------CUAGUCGCGcu -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 58086 | 0.65 | 0.751481 |
Target: 5'- cGCCGCagCGGGuGCCGcGccgcuacuacuucugCGGCGCGGc -3' miRNA: 3'- -CGGCGa-GCCC-CGGUuCua-------------GUCGCGCU- -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 99850 | 0.66 | 0.74579 |
Target: 5'- cGCCGCUcggCGGGGCUgcGcaguacguuaccucuUCuAGCGCGGc -3' miRNA: 3'- -CGGCGA---GCCCCGGuuCu--------------AG-UCGCGCU- -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 32941 | 0.66 | 0.744838 |
Target: 5'- cCCGCgcgCGGuGCCcgcGGA-CAGCGCGGu -3' miRNA: 3'- cGGCGa--GCCcCGGu--UCUaGUCGCGCU- -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 63752 | 0.66 | 0.744838 |
Target: 5'- cGCCGCcuggcggCGcGGGCCAGGccCGgagaccGCGCGGa -3' miRNA: 3'- -CGGCGa------GC-CCCGGUUCuaGU------CGCGCU- -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 68464 | 0.66 | 0.744838 |
Target: 5'- cCCGCggcCGGGGCCccgccgcgcGGGcgCaAGCGCGc -3' miRNA: 3'- cGGCGa--GCCCCGG---------UUCuaG-UCGCGCu -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 13111 | 0.66 | 0.744838 |
Target: 5'- uGUCGCggcCGGGGCgCGcGggCGGCGCc- -3' miRNA: 3'- -CGGCGa--GCCCCG-GUuCuaGUCGCGcu -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 26514 | 0.66 | 0.744838 |
Target: 5'- uGCCGggcgCGGGGCCGGGGgcguUCGGCcauGCu- -3' miRNA: 3'- -CGGCga--GCCCCGGUUCU----AGUCG---CGcu -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 110686 | 0.66 | 0.744838 |
Target: 5'- cGCUGCgugcgCGaGGGUgAGGG-CGGCGCGc -3' miRNA: 3'- -CGGCGa----GC-CCCGgUUCUaGUCGCGCu -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 72817 | 0.66 | 0.744838 |
Target: 5'- gGCgGCaUCGGGGCCAuGGcgcUCGG-GCGu -3' miRNA: 3'- -CGgCG-AGCCCCGGUuCU---AGUCgCGCu -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 35246 | 0.66 | 0.744838 |
Target: 5'- gGCCgGCgggCGcGcGGCgGAGAUCAGcCGCGc -3' miRNA: 3'- -CGG-CGa--GC-C-CCGgUUCUAGUC-GCGCu -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 14890 | 0.66 | 0.744838 |
Target: 5'- -aCGCUaCGGGGCCG---UCcGCGCGc -3' miRNA: 3'- cgGCGA-GCCCCGGUucuAGuCGCGCu -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 129327 | 0.66 | 0.744838 |
Target: 5'- uGCCGggcgCGGGGCCGGGGgcguUCGGCcauGCu- -3' miRNA: 3'- -CGGCga--GCCCCGGUUCU----AGUCG---CGcu -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 4545 | 0.66 | 0.744838 |
Target: 5'- gGCCGCcCGcGGGU--GGcgCGGCGUGGa -3' miRNA: 3'- -CGGCGaGC-CCCGguUCuaGUCGCGCU- -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 43223 | 0.66 | 0.743885 |
Target: 5'- cGCCGUugcccgguggcggUgGGGGCgCGcGggCGGCGCGGc -3' miRNA: 3'- -CGGCG-------------AgCCCCG-GUuCuaGUCGCGCU- -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 1513 | 0.66 | 0.735268 |
Target: 5'- aGCCGCgcguaGGcGGCCucGGcgC-GCGCGAa -3' miRNA: 3'- -CGGCGag---CC-CCGGu-UCuaGuCGCGCU- -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 85572 | 0.66 | 0.735268 |
Target: 5'- cGCCGC-CGucGGCCGAGAgguUCcGCGCa- -3' miRNA: 3'- -CGGCGaGCc-CCGGUUCU---AGuCGCGcu -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 120827 | 0.66 | 0.735268 |
Target: 5'- cGCCGCUCGaugaGGCCccGAGAggCGGC-CGGc -3' miRNA: 3'- -CGGCGAGCc---CCGG--UUCUa-GUCGcGCU- -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 102304 | 0.66 | 0.735268 |
Target: 5'- cGCCGCggucUCGGcGGCCAcgcGGGccUC-GCGCGc -3' miRNA: 3'- -CGGCG----AGCC-CCGGU---UCU--AGuCGCGCu -5' |
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6653 | 3' | -59.7 | NC_001847.1 | + | 60862 | 0.66 | 0.735268 |
Target: 5'- cCCGC-CGaGGCC-AGcgCAGCGCGc -3' miRNA: 3'- cGGCGaGCcCCGGuUCuaGUCGCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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