miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6653 3' -59.7 NC_001847.1 + 85059 0.65 0.753369
Target:  5'- gGCCGagcaUCaGGGGCgCGGugccaauGAUCAGCGCc- -3'
miRNA:   3'- -CGGCg---AG-CCCCG-GUU-------CUAGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 58086 0.65 0.751481
Target:  5'- cGCCGCagCGGGuGCCGcGccgcuacuacuucugCGGCGCGGc -3'
miRNA:   3'- -CGGCGa-GCCC-CGGUuCua-------------GUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 99850 0.66 0.74579
Target:  5'- cGCCGCUcggCGGGGCUgcGcaguacguuaccucuUCuAGCGCGGc -3'
miRNA:   3'- -CGGCGA---GCCCCGGuuCu--------------AG-UCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 4545 0.66 0.744838
Target:  5'- gGCCGCcCGcGGGU--GGcgCGGCGUGGa -3'
miRNA:   3'- -CGGCGaGC-CCCGguUCuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 68464 0.66 0.744838
Target:  5'- cCCGCggcCGGGGCCccgccgcgcGGGcgCaAGCGCGc -3'
miRNA:   3'- cGGCGa--GCCCCGG---------UUCuaG-UCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 13111 0.66 0.744838
Target:  5'- uGUCGCggcCGGGGCgCGcGggCGGCGCc- -3'
miRNA:   3'- -CGGCGa--GCCCCG-GUuCuaGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 26514 0.66 0.744838
Target:  5'- uGCCGggcgCGGGGCCGGGGgcguUCGGCcauGCu- -3'
miRNA:   3'- -CGGCga--GCCCCGGUUCU----AGUCG---CGcu -5'
6653 3' -59.7 NC_001847.1 + 110686 0.66 0.744838
Target:  5'- cGCUGCgugcgCGaGGGUgAGGG-CGGCGCGc -3'
miRNA:   3'- -CGGCGa----GC-CCCGgUUCUaGUCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 63752 0.66 0.744838
Target:  5'- cGCCGCcuggcggCGcGGGCCAGGccCGgagaccGCGCGGa -3'
miRNA:   3'- -CGGCGa------GC-CCCGGUUCuaGU------CGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 72817 0.66 0.744838
Target:  5'- gGCgGCaUCGGGGCCAuGGcgcUCGG-GCGu -3'
miRNA:   3'- -CGgCG-AGCCCCGGUuCU---AGUCgCGCu -5'
6653 3' -59.7 NC_001847.1 + 35246 0.66 0.744838
Target:  5'- gGCCgGCgggCGcGcGGCgGAGAUCAGcCGCGc -3'
miRNA:   3'- -CGG-CGa--GC-C-CCGgUUCUAGUC-GCGCu -5'
6653 3' -59.7 NC_001847.1 + 32941 0.66 0.744838
Target:  5'- cCCGCgcgCGGuGCCcgcGGA-CAGCGCGGu -3'
miRNA:   3'- cGGCGa--GCCcCGGu--UCUaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 14890 0.66 0.744838
Target:  5'- -aCGCUaCGGGGCCG---UCcGCGCGc -3'
miRNA:   3'- cgGCGA-GCCCCGGUucuAGuCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 129327 0.66 0.744838
Target:  5'- uGCCGggcgCGGGGCCGGGGgcguUCGGCcauGCu- -3'
miRNA:   3'- -CGGCga--GCCCCGGUUCU----AGUCG---CGcu -5'
6653 3' -59.7 NC_001847.1 + 43223 0.66 0.743885
Target:  5'- cGCCGUugcccgguggcggUgGGGGCgCGcGggCGGCGCGGc -3'
miRNA:   3'- -CGGCG-------------AgCCCCG-GUuCuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 85572 0.66 0.735268
Target:  5'- cGCCGC-CGucGGCCGAGAgguUCcGCGCa- -3'
miRNA:   3'- -CGGCGaGCc-CCGGUUCU---AGuCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 102304 0.66 0.735268
Target:  5'- cGCCGCggucUCGGcGGCCAcgcGGGccUC-GCGCGc -3'
miRNA:   3'- -CGGCG----AGCC-CCGGU---UCU--AGuCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 1513 0.66 0.735268
Target:  5'- aGCCGCgcguaGGcGGCCucGGcgC-GCGCGAa -3'
miRNA:   3'- -CGGCGag---CC-CCGGu-UCuaGuCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 60862 0.66 0.735268
Target:  5'- cCCGC-CGaGGCC-AGcgCAGCGCGc -3'
miRNA:   3'- cGGCGaGCcCCGGuUCuaGUCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 120827 0.66 0.735268
Target:  5'- cGCCGCUCGaugaGGCCccGAGAggCGGC-CGGc -3'
miRNA:   3'- -CGGCGAGCc---CCGG--UUCUa-GUCGcGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.