miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 3' -55.6 NC_001847.1 + 103831 0.66 0.911152
Target:  5'- aCCAGGCcgccgcccGCGGCGCG--CCgCAGCa -3'
miRNA:   3'- -GGUCCGucua----CGUCGUGCuaGG-GUCG- -5'
6657 3' -55.6 NC_001847.1 + 36220 0.66 0.911152
Target:  5'- -aAGGCGGGUGCuuGC-CGAcacUCCAGUg -3'
miRNA:   3'- ggUCCGUCUACGu-CGuGCUa--GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 12035 0.66 0.911152
Target:  5'- gCCcGGCGGA-GC-GCugGAcgCCCuGCg -3'
miRNA:   3'- -GGuCCGUCUaCGuCGugCUa-GGGuCG- -5'
6657 3' -55.6 NC_001847.1 + 56994 0.66 0.911152
Target:  5'- gCCGGGUGGGUaugagccgcagGcCGGCGCGcgCCC-GCu -3'
miRNA:   3'- -GGUCCGUCUA-----------C-GUCGUGCuaGGGuCG- -5'
6657 3' -55.6 NC_001847.1 + 47871 0.66 0.911152
Target:  5'- gCGGGCGcgcGCAGCGCGcgcgcgCCCGcGCg -3'
miRNA:   3'- gGUCCGUcuaCGUCGUGCua----GGGU-CG- -5'
6657 3' -55.6 NC_001847.1 + 1018 0.66 0.911152
Target:  5'- aCCAGGCcgccgcccGCGGCGCG--CCgCAGCa -3'
miRNA:   3'- -GGUCCGucua----CGUCGUGCuaGG-GUCG- -5'
6657 3' -55.6 NC_001847.1 + 73763 0.66 0.911152
Target:  5'- gCCGGGCg---GCGGCGCGggCCgCuacgAGCg -3'
miRNA:   3'- -GGUCCGucuaCGUCGUGCuaGG-G----UCG- -5'
6657 3' -55.6 NC_001847.1 + 102451 0.66 0.911152
Target:  5'- gCGGGCAGGUcgGGCGCcccUCCAGCc -3'
miRNA:   3'- gGUCCGUCUAcgUCGUGcuaGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 97745 0.66 0.911152
Target:  5'- --cGGCGGcgGCGGCA-GAUacuugCCAGCc -3'
miRNA:   3'- gguCCGUCuaCGUCGUgCUAg----GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 126030 0.66 0.911152
Target:  5'- gCAGGUcccuAGGUGCagucgaGGCGCGGUUCCuggagguGCu -3'
miRNA:   3'- gGUCCG----UCUACG------UCGUGCUAGGGu------CG- -5'
6657 3' -55.6 NC_001847.1 + 34402 0.66 0.911152
Target:  5'- gCCGcGGCAGAcGCGGCGCuGGgggCGGCg -3'
miRNA:   3'- -GGU-CCGUCUaCGUCGUG-CUaggGUCG- -5'
6657 3' -55.6 NC_001847.1 + 23217 0.66 0.911152
Target:  5'- gCAGGUcccuAGGUGCagucgaGGCGCGGUUCCuggagguGCu -3'
miRNA:   3'- gGUCCG----UCUACG------UCGUGCUAGGGu------CG- -5'
6657 3' -55.6 NC_001847.1 + 92222 0.66 0.911152
Target:  5'- -uGGGCGGccaGCAGCGCGcgCUCucgAGCc -3'
miRNA:   3'- ggUCCGUCua-CGUCGUGCuaGGG---UCG- -5'
6657 3' -55.6 NC_001847.1 + 134195 0.66 0.911152
Target:  5'- gCCGGcGCAGucGUccccgGGCGCGGgcucgggcuUCCCGGCg -3'
miRNA:   3'- -GGUC-CGUCuaCG-----UCGUGCU---------AGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 71156 0.66 0.911152
Target:  5'- gCAGGagcucgcggacCAGGUGCGGCACuuccugGAcgCCUGGCa -3'
miRNA:   3'- gGUCC-----------GUCUACGUCGUG------CUa-GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 79087 0.66 0.911152
Target:  5'- gCAGGCuucaGCGGCGCc-UCCCAGg -3'
miRNA:   3'- gGUCCGucuaCGUCGUGcuAGGGUCg -5'
6657 3' -55.6 NC_001847.1 + 34185 0.66 0.911152
Target:  5'- gCGGGcCGGggGCGcGCACG-UCCC-GCc -3'
miRNA:   3'- gGUCC-GUCuaCGU-CGUGCuAGGGuCG- -5'
6657 3' -55.6 NC_001847.1 + 91354 0.66 0.911152
Target:  5'- aCCGGcGCGccgGC-GCGCGcgUCCAGCa -3'
miRNA:   3'- -GGUC-CGUcuaCGuCGUGCuaGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 31382 0.66 0.911152
Target:  5'- gCCGGcGCAGucGUccccgGGCGCGGgcucgggcuUCCCGGCg -3'
miRNA:   3'- -GGUC-CGUCuaCG-----UCGUGCU---------AGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 68851 0.66 0.911152
Target:  5'- cUCGGGCGcGAggcgGCGGCGUGcgCCgGGCc -3'
miRNA:   3'- -GGUCCGU-CUa---CGUCGUGCuaGGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.