miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6662 3' -60.3 NC_001847.1 + 39405 0.66 0.719398
Target:  5'- cCGGccGGGCuccuccgaAAGCagcgAGGGGGGCGCgugGGCg -3'
miRNA:   3'- cGCCa-CUCG--------UUCG----UCCCUCCGCG---CCG- -5'
6662 3' -60.3 NC_001847.1 + 65115 0.66 0.719398
Target:  5'- cGCGGcucGGCuGGCGGuGGGGCuCGGCu -3'
miRNA:   3'- -CGCCac-UCGuUCGUCcCUCCGcGCCG- -5'
6662 3' -60.3 NC_001847.1 + 55438 0.66 0.719398
Target:  5'- cGCGGUccugcAGCGccuGGCGccGGcGGGGCGCGcGCc -3'
miRNA:   3'- -CGCCAc----UCGU---UCGU--CC-CUCCGCGC-CG- -5'
6662 3' -60.3 NC_001847.1 + 54017 0.66 0.719398
Target:  5'- cGCGGUcAGCGAGCugcaguucuGGAuguccucgucgGcGCGCGGCg -3'
miRNA:   3'- -CGCCAcUCGUUCGuc-------CCU-----------C-CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 135128 0.66 0.719398
Target:  5'- cCGG--GGUc-GCAGGGGGcccGCGCGGCg -3'
miRNA:   3'- cGCCacUCGuuCGUCCCUC---CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 21954 0.66 0.719398
Target:  5'- cGCGGc-GGCAccgGGGGGGGCuuucgGCGGCg -3'
miRNA:   3'- -CGCCacUCGUucgUCCCUCCG-----CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 64691 0.66 0.719398
Target:  5'- cGCGcGUGucGCAGuGC-GucAGGCGCGGCa -3'
miRNA:   3'- -CGC-CACu-CGUU-CGuCccUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 32315 0.66 0.719398
Target:  5'- cCGG--GGUc-GCAGGGGGcccGCGCGGCg -3'
miRNA:   3'- cGCCacUCGuuCGUCCCUC---CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 115973 0.66 0.718425
Target:  5'- cGCcGUGcuGC--GCGGGGuaacaacGGGCGCGGCc -3'
miRNA:   3'- -CGcCACu-CGuuCGUCCC-------UCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 41977 0.66 0.716476
Target:  5'- uGCGuucgGGGCGucGCGgccgccuuucccgcGGGGGGCGcCGGCa -3'
miRNA:   3'- -CGCca--CUCGUu-CGU--------------CCCUCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 117502 0.66 0.710613
Target:  5'- aGCGcGUGGGCAGGUuccgcuccacGCGCGGCg -3'
miRNA:   3'- -CGC-CACUCGUUCGucccuc----CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 49046 0.66 0.709633
Target:  5'- cGUGGUG-GCGcGCAGcucacGGccgcGGGCGgCGGCa -3'
miRNA:   3'- -CGCCACuCGUuCGUC-----CC----UCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 56031 0.66 0.709633
Target:  5'- gGCGGcGGGCcuucuuccaCAGGcacGGCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGuuc------GUCCcu-CCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 36 0.66 0.709633
Target:  5'- cCGGggGGGUguuuuuGGGgGGGGGcggaaauuucGGCGCGGCg -3'
miRNA:   3'- cGCCa-CUCG------UUCgUCCCU----------CCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 54581 0.66 0.709633
Target:  5'- cGCGcGcGAGCGAuGUucGGGGGCGCcgugGGCg -3'
miRNA:   3'- -CGC-CaCUCGUU-CGucCCUCCGCG----CCG- -5'
6662 3' -60.3 NC_001847.1 + 75639 0.66 0.709633
Target:  5'- aCGGcGAuGCcgGAGCc-GGAGGCGCGGg -3'
miRNA:   3'- cGCCaCU-CG--UUCGucCCUCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 87996 0.66 0.709633
Target:  5'- uGCGGc---CGGGCccGaGGGGCGCGGCg -3'
miRNA:   3'- -CGCCacucGUUCGucC-CUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 83180 0.66 0.709633
Target:  5'- aCGGgcuGGCGgacGGCGGGG-GGCGC-GCa -3'
miRNA:   3'- cGCCac-UCGU---UCGUCCCuCCGCGcCG- -5'
6662 3' -60.3 NC_001847.1 + 51054 0.66 0.709633
Target:  5'- aCGGUcGAGCAGGCcaccGAGGCGUucgugcgcgGGCu -3'
miRNA:   3'- cGCCA-CUCGUUCGucc-CUCCGCG---------CCG- -5'
6662 3' -60.3 NC_001847.1 + 46888 0.66 0.709633
Target:  5'- cGCGuGcGAGCGccgcuucagcgaGGCuucGGGGGGCGCgucgGGCc -3'
miRNA:   3'- -CGC-CaCUCGU------------UCGu--CCCUCCGCG----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.