miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6664 3' -62.6 NC_001847.1 + 16648 0.65 0.598945
Target:  5'- uGCCgUcGGGGcCCCGCGCCuacaggcgcgcccgGGC-CUUGCg -3'
miRNA:   3'- -CGGgA-CCCU-GGGCGCGG--------------UCGaGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 105320 0.65 0.598945
Target:  5'- cGCgUUGcGGACCUGCGUCgucgugggcgccggGGCgCUCGCg -3'
miRNA:   3'- -CGgGAC-CCUGGGCGCGG--------------UCGaGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 66317 0.66 0.595981
Target:  5'- cGCCC-GGGGCCCuuuuGCGUCauuguuccccccgucGGCccgCUCGCg -3'
miRNA:   3'- -CGGGaCCCUGGG----CGCGG---------------UCGa--GAGUG- -5'
6664 3' -62.6 NC_001847.1 + 85075 0.66 0.592033
Target:  5'- cGCCC-GGG-UCCGCGCC-GCg--CGCg -3'
miRNA:   3'- -CGGGaCCCuGGGCGCGGuCGagaGUG- -5'
6664 3' -62.6 NC_001847.1 + 32313 0.66 0.592033
Target:  5'- cCCCggggucgcagGGGGCCCGCG-CGGCgcggCGCg -3'
miRNA:   3'- cGGGa---------CCCUGGGCGCgGUCGaga-GUG- -5'
6664 3' -62.6 NC_001847.1 + 5189 0.66 0.592033
Target:  5'- gGCgC-GGGagaaGCCCuCGCCGGCUCUCuCg -3'
miRNA:   3'- -CGgGaCCC----UGGGcGCGGUCGAGAGuG- -5'
6664 3' -62.6 NC_001847.1 + 75256 0.66 0.592033
Target:  5'- cGCCCUccucgccaacgcGGaGGCCgCGCGCgCGGCcCUCGg -3'
miRNA:   3'- -CGGGA------------CC-CUGG-GCGCG-GUCGaGAGUg -5'
6664 3' -62.6 NC_001847.1 + 110302 0.66 0.592033
Target:  5'- uGCCuCUGGGugCCG-GaCCuGCUCUUu- -3'
miRNA:   3'- -CGG-GACCCugGGCgC-GGuCGAGAGug -5'
6664 3' -62.6 NC_001847.1 + 89908 0.66 0.592033
Target:  5'- cGCCCgaGGuuGugCCGCGCgaGGCcgcgCUCGCg -3'
miRNA:   3'- -CGGGa-CC--CugGGCGCGg-UCGa---GAGUG- -5'
6664 3' -62.6 NC_001847.1 + 63553 0.66 0.592033
Target:  5'- -gCCUGGG-CCgGCGCCGGgCgg-CACu -3'
miRNA:   3'- cgGGACCCuGGgCGCGGUC-GagaGUG- -5'
6664 3' -62.6 NC_001847.1 + 135126 0.66 0.592033
Target:  5'- cCCCggggucgcagGGGGCCCGCG-CGGCgcggCGCg -3'
miRNA:   3'- cGGGa---------CCCUGGGCGCgGUCGaga-GUG- -5'
6664 3' -62.6 NC_001847.1 + 47795 0.66 0.592033
Target:  5'- gGCCUcGGcGCCCGCGaUCGGCUC-CAg -3'
miRNA:   3'- -CGGGaCCcUGGGCGC-GGUCGAGaGUg -5'
6664 3' -62.6 NC_001847.1 + 108002 0.66 0.592033
Target:  5'- gGCgC-GGGagaaGCCCuCGCCGGCUCUCuCg -3'
miRNA:   3'- -CGgGaCCC----UGGGcGCGGUCGAGAGuG- -5'
6664 3' -62.6 NC_001847.1 + 754 0.66 0.582182
Target:  5'- cCCCUaGGGcgaggccgGCCCGcCGCCGGCgg-CGCc -3'
miRNA:   3'- cGGGA-CCC--------UGGGC-GCGGUCGagaGUG- -5'
6664 3' -62.6 NC_001847.1 + 34581 0.66 0.582182
Target:  5'- aGCgCCUGGcGGCaauaaucgCCGCgGCCGGCUCccCGCc -3'
miRNA:   3'- -CG-GGACC-CUG--------GGCG-CGGUCGAGa-GUG- -5'
6664 3' -62.6 NC_001847.1 + 71996 0.66 0.582182
Target:  5'- cGCCUgcgcgccGGGAUCCgGUGCCAcagccGCUUUUACg -3'
miRNA:   3'- -CGGGa------CCCUGGG-CGCGGU-----CGAGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 103567 0.66 0.582182
Target:  5'- cCCCUaGGGcgaggccgGCCCGcCGCCGGCgg-CGCc -3'
miRNA:   3'- cGGGA-CCC--------UGGGC-GCGGUCGagaGUG- -5'
6664 3' -62.6 NC_001847.1 + 72311 0.66 0.582182
Target:  5'- cGCCUcgGGGGgCUGCGgCAGCUg-CGCg -3'
miRNA:   3'- -CGGGa-CCCUgGGCGCgGUCGAgaGUG- -5'
6664 3' -62.6 NC_001847.1 + 73673 0.66 0.579233
Target:  5'- cGCCCUGG--CCCGCGCCaucgaugaaggcgcGGCcCggCGCg -3'
miRNA:   3'- -CGGGACCcuGGGCGCGG--------------UCGaGa-GUG- -5'
6664 3' -62.6 NC_001847.1 + 16997 0.66 0.572365
Target:  5'- cGCCCcucgGGGACgcagCGCGCCucgcagacGGC-CUCGCc -3'
miRNA:   3'- -CGGGa---CCCUGg---GCGCGG--------UCGaGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.