miRNA display CGI


Results 1 - 20 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 31224 0.66 0.957442
Target:  5'- ----gAGGC-CGCGGCggCGCcGCCCg -3'
miRNA:   3'- guauaUUCGcGCGCUGuaGCG-CGGGg -5'
6665 5' -53.9 NC_001847.1 + 125288 0.66 0.957442
Target:  5'- -uUGUAGGCGUGCGucgguccacacCAggGCGCCUUg -3'
miRNA:   3'- guAUAUUCGCGCGCu----------GUagCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 134037 0.66 0.957442
Target:  5'- ----gAGGC-CGCGGCggCGCcGCCCg -3'
miRNA:   3'- guauaUUCGcGCGCUGuaGCG-CGGGg -5'
6665 5' -53.9 NC_001847.1 + 131981 0.66 0.957442
Target:  5'- ----gAGGCGCuggagGCGGCccgcCGCGCCgCCg -3'
miRNA:   3'- guauaUUCGCG-----CGCUGua--GCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 60994 0.66 0.957442
Target:  5'- ----gAGGCGC-CGcCAUCauuCGCCCCg -3'
miRNA:   3'- guauaUUCGCGcGCuGUAGc--GCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 61938 0.66 0.957442
Target:  5'- ------cGCGUcaGCGGCggCGCGgCCCg -3'
miRNA:   3'- guauauuCGCG--CGCUGuaGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 32713 0.66 0.957442
Target:  5'- -----cGGCGCGCuuCAUggaGCGCCUCu -3'
miRNA:   3'- guauauUCGCGCGcuGUAg--CGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 8589 0.66 0.957442
Target:  5'- gGUGguuAGcCGCGCGAgCGUCaGCcgcagcgcaaGCCCCg -3'
miRNA:   3'- gUAUau-UC-GCGCGCU-GUAG-CG----------CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 32194 0.66 0.957442
Target:  5'- ------cGCGCGCGGCGgagguuacCGCGgCCUu -3'
miRNA:   3'- guauauuCGCGCGCUGUa-------GCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 9523 0.66 0.957442
Target:  5'- ----cGAGCGgGCGGCGcgcuaGCGUCCg -3'
miRNA:   3'- guauaUUCGCgCGCUGUag---CGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 36033 0.66 0.957442
Target:  5'- ---cUGAGCGgugcCGCGGCAacuuauugcUCGCagacagGCCCCa -3'
miRNA:   3'- guauAUUCGC----GCGCUGU---------AGCG------CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 38312 0.66 0.957442
Target:  5'- cCGUGUAGccaacgccCGCGCGGuCGccgccgcugCGCGCCCCc -3'
miRNA:   3'- -GUAUAUUc-------GCGCGCU-GUa--------GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 21204 0.66 0.957442
Target:  5'- gCGUAgGAGaCGCcgccGCGACcgCGCGCUgCu -3'
miRNA:   3'- -GUAUaUUC-GCG----CGCUGuaGCGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 29168 0.66 0.957442
Target:  5'- ----gAGGCGCuggagGCGGCccgcCGCGCCgCCg -3'
miRNA:   3'- guauaUUCGCG-----CGCUGua--GCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 13380 0.66 0.957442
Target:  5'- -----cGGCGCGC-ACGUCcggGCGCgCCg -3'
miRNA:   3'- guauauUCGCGCGcUGUAG---CGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 39833 0.66 0.957442
Target:  5'- ----cGAGCGCuuccuGCGugG-CGCGCgCCa -3'
miRNA:   3'- guauaUUCGCG-----CGCugUaGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 118779 0.66 0.957442
Target:  5'- gGUGUGAGCgGCacCGGCAgccgccaGCGCCuCCa -3'
miRNA:   3'- gUAUAUUCG-CGc-GCUGUag-----CGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 31833 0.66 0.957442
Target:  5'- ----aGAGUGCGagGACccuacguUCGCGCgCCCg -3'
miRNA:   3'- guauaUUCGCGCg-CUGu------AGCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 53446 0.66 0.957442
Target:  5'- -----cGGCGCGCGcGCcUgGCGCUCUa -3'
miRNA:   3'- guauauUCGCGCGC-UGuAgCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 73818 0.66 0.957442
Target:  5'- ---cUAGGCGCGCccgccccGCccCGCGCaCCCg -3'
miRNA:   3'- guauAUUCGCGCGc------UGuaGCGCG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.