miRNA display CGI


Results 1 - 20 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 134911 0.69 0.83306
Target:  5'- gCGUcgGGGCGCGaggcccgGGC-UCGgGCCCCc -3'
miRNA:   3'- -GUAuaUUCGCGCg------CUGuAGCgCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 134772 0.76 0.484862
Target:  5'- -----cGGCGCGCGGCGcgcggggCGgGCCCCg -3'
miRNA:   3'- guauauUCGCGCGCUGUa------GCgCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 134651 0.7 0.788476
Target:  5'- --gGUuGGCGCGCGGC----CGCCCCg -3'
miRNA:   3'- guaUAuUCGCGCGCUGuagcGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 134528 0.7 0.806811
Target:  5'- ----gAGGCGCG-GGCcgCGCGCCgCu -3'
miRNA:   3'- guauaUUCGCGCgCUGuaGCGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 134335 0.66 0.953514
Target:  5'- ------cGUcCGCGGCGUCGUcCCCCg -3'
miRNA:   3'- guauauuCGcGCGCUGUAGCGcGGGG- -5'
6665 5' -53.9 NC_001847.1 + 134150 0.66 0.935394
Target:  5'- ----gGAGCGCGUGcCGcCGCcggcggcggaaGCCCCg -3'
miRNA:   3'- guauaUUCGCGCGCuGUaGCG-----------CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 134037 0.66 0.957442
Target:  5'- ----gAGGC-CGCGGCggCGCcGCCCg -3'
miRNA:   3'- guauaUUCGcGCGCUGuaGCG-CGGGg -5'
6665 5' -53.9 NC_001847.1 + 134003 0.68 0.880237
Target:  5'- ----gGAGcCGCGCGcCGagGCGCCgCCg -3'
miRNA:   3'- guauaUUC-GCGCGCuGUagCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 133913 0.66 0.952289
Target:  5'- gGUGUAccuggccugcgggcGGCGCGCGcuggaGC-UgGCGCCCg -3'
miRNA:   3'- gUAUAU--------------UCGCGCGC-----UGuAgCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 133732 0.72 0.699835
Target:  5'- ----cGGGCGCGgGGCcgCGUGCCUg -3'
miRNA:   3'- guauaUUCGCGCgCUGuaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 133569 0.68 0.894191
Target:  5'- -----cGGCGCGCuGGCG-CGCGCCg- -3'
miRNA:   3'- guauauUCGCGCG-CUGUaGCGCGGgg -5'
6665 5' -53.9 NC_001847.1 + 133322 0.68 0.887331
Target:  5'- ----cGGGCGCGCcgGACGUgagCGCGCUCg -3'
miRNA:   3'- guauaUUCGCGCG--CUGUA---GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 133277 0.68 0.900812
Target:  5'- gCGUcUAAGcCGCGCGG---UGCGCUCCg -3'
miRNA:   3'- -GUAuAUUC-GCGCGCUguaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 133140 0.67 0.907192
Target:  5'- ------cGUGCGCGugGUgGUGCUCUa -3'
miRNA:   3'- guauauuCGCGCGCugUAgCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 133099 0.69 0.856812
Target:  5'- -----cGGCGCGUGGCcuggaugucgcagAUCGCGgaCCCCg -3'
miRNA:   3'- guauauUCGCGCGCUG-------------UAGCGC--GGGG- -5'
6665 5' -53.9 NC_001847.1 + 133030 0.69 0.865366
Target:  5'- ----gAGGCGCuggcCGAgAUCGCGgCCCg -3'
miRNA:   3'- guauaUUCGCGc---GCUgUAGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 132781 0.7 0.788476
Target:  5'- ----cGGGCGCGCGACuggaccucaUGCGgCCCg -3'
miRNA:   3'- guauaUUCGCGCGCUGua-------GCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 132296 0.68 0.880237
Target:  5'- ----cGAGuCGCaGCGGCAUgGCGgaCCCCg -3'
miRNA:   3'- guauaUUC-GCG-CGCUGUAgCGC--GGGG- -5'
6665 5' -53.9 NC_001847.1 + 132155 0.74 0.575241
Target:  5'- ------cGCGCGCGGCuccagcgCGCGgCCCCg -3'
miRNA:   3'- guauauuCGCGCGCUGua-----GCGC-GGGG- -5'
6665 5' -53.9 NC_001847.1 + 132113 0.73 0.658478
Target:  5'- ---cUGGGCGCGCaGACGUgacCGCCCCu -3'
miRNA:   3'- guauAUUCGCGCG-CUGUAgc-GCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.