miRNA display CGI


Results 1 - 20 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 59319 0.65 0.475198
Target:  5'- gGCGcgGcGCC-GGCgGCGCCGUaccagcccggcaucGGGGGc -3'
miRNA:   3'- -CGCuaC-CGGcCCGgCGCGGCG--------------CCCUC- -5'
6670 3' -66.1 NC_001847.1 + 4337 0.66 0.469045
Target:  5'- ----cGGCCGcGGCCGCcuccgccccgGCCGCGGc-- -3'
miRNA:   3'- cgcuaCCGGC-CCGGCG----------CGGCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 28868 0.66 0.469045
Target:  5'- cGCcAUGGCCGcGCagaaCGCGCUGUGGGc- -3'
miRNA:   3'- -CGcUACCGGCcCG----GCGCGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 31805 0.66 0.469045
Target:  5'- ----cGGCCGuGGCgguggGCGgCGCGGGGGc -3'
miRNA:   3'- cgcuaCCGGC-CCGg----CGCgGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 107150 0.66 0.469045
Target:  5'- ----cGGCCGcGGCCGCcuccgccccgGCCGCGGc-- -3'
miRNA:   3'- cgcuaCCGGC-CCGGCG----------CGGCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 62727 0.66 0.469045
Target:  5'- cGCGuugcGGCCGuGGCCGuCcCCGCGucGGGGc -3'
miRNA:   3'- -CGCua--CCGGC-CCGGC-GcGGCGC--CCUC- -5'
6670 3' -66.1 NC_001847.1 + 131681 0.66 0.469045
Target:  5'- cGCcAUGGCCGcGCagaaCGCGCUGUGGGc- -3'
miRNA:   3'- -CGcUACCGGCcCG----GCGCGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 107191 0.66 0.469045
Target:  5'- aGCGA--GCUGGGCC-CGgaCGCGaGGAGg -3'
miRNA:   3'- -CGCUacCGGCCCGGcGCg-GCGC-CCUC- -5'
6670 3' -66.1 NC_001847.1 + 6869 0.66 0.469045
Target:  5'- cGCGcgGGuaGGGCCuuGCCGa-GGAGc -3'
miRNA:   3'- -CGCuaCCggCCCGGcgCGGCgcCCUC- -5'
6670 3' -66.1 NC_001847.1 + 115493 0.66 0.468169
Target:  5'- cCGgcGGCCGGGCCcgcaagcggccgcGCGCCGacgccggcgcccCGGGc- -3'
miRNA:   3'- cGCuaCCGGCCCGG-------------CGCGGC------------GCCCuc -5'
6670 3' -66.1 NC_001847.1 + 73031 0.66 0.467294
Target:  5'- cGCGGcagcGGCCGcggacaaccugcuGGCgaagcaaCGCGCCGCGGGc- -3'
miRNA:   3'- -CGCUa---CCGGC-------------CCG-------GCGCGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 15560 0.66 0.460325
Target:  5'- cGCGGccGUCGGGCCGCGgCCGCc---- -3'
miRNA:   3'- -CGCUacCGGCCCGGCGC-GGCGcccuc -5'
6670 3' -66.1 NC_001847.1 + 65493 0.66 0.460325
Target:  5'- cGCGua--CCGGGUCGCGgCGCGGcuGGGa -3'
miRNA:   3'- -CGCuaccGGCCCGGCGCgGCGCC--CUC- -5'
6670 3' -66.1 NC_001847.1 + 10843 0.66 0.460325
Target:  5'- cGCGAcggcGGCgCGuGGCCgagGCGCgGCGGGc- -3'
miRNA:   3'- -CGCUa---CCG-GC-CCGG---CGCGgCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 28457 0.66 0.460325
Target:  5'- aGUGccuAUGGCCGccguGGCacgaCGCGCCGCGGa-- -3'
miRNA:   3'- -CGC---UACCGGC----CCG----GCGCGGCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 103620 0.66 0.460325
Target:  5'- aCGA-GGCgGGGgaCGaCGCCGCGGacGAGg -3'
miRNA:   3'- cGCUaCCGgCCCg-GC-GCGGCGCC--CUC- -5'
6670 3' -66.1 NC_001847.1 + 132184 0.66 0.460325
Target:  5'- gGCGcUGcgcGCCGaGGCgGcCGCCGCGcuGGAGg -3'
miRNA:   3'- -CGCuAC---CGGC-CCGgC-GCGGCGC--CCUC- -5'
6670 3' -66.1 NC_001847.1 + 96543 0.66 0.460325
Target:  5'- cGCGccGGCUGugcaGCCGCGCgCGCGGu-- -3'
miRNA:   3'- -CGCuaCCGGCc---CGGCGCG-GCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 120074 0.66 0.460325
Target:  5'- gGCuccuGCCGaGCCGCGCgggGCGGGAGa -3'
miRNA:   3'- -CGcuacCGGCcCGGCGCGg--CGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 29371 0.66 0.460325
Target:  5'- gGCGcUGcgcGCCGaGGCgGcCGCCGCGcuGGAGg -3'
miRNA:   3'- -CGCuAC---CGGC-CCGgC-GCGGCGC--CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.