miRNA display CGI


Results 1 - 20 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 5' -53.7 NC_001847.1 + 73029 0.66 0.966717
Target:  5'- gCCGCGGCAGCggccgcggacaaccuGCUggcgAAGcaacgcgccGCGGGCgCGg -3'
miRNA:   3'- -GGUGCCGUUG---------------CGAa---UUCa--------UGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 60856 0.66 0.966717
Target:  5'- uCCGCGcccgccgaggccagcGCAGCGCgc--GcGCGGGCCc -3'
miRNA:   3'- -GGUGC---------------CGUUGCGaauuCaUGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 117290 0.66 0.965422
Target:  5'- aCC-CGGCGGCGCUggcaacGCGaGCCGc -3'
miRNA:   3'- -GGuGCCGUUGCGAauuca-UGCcCGGC- -5'
6671 5' -53.7 NC_001847.1 + 50520 0.66 0.965422
Target:  5'- gCCGCGGCAugGCcccgcucgAAGgcgacgcaGCGGcGCUGc -3'
miRNA:   3'- -GGUGCCGUugCGaa------UUCa-------UGCC-CGGC- -5'
6671 5' -53.7 NC_001847.1 + 3734 0.66 0.965422
Target:  5'- gCCACGGC-GCGC------ACGcGGCCGu -3'
miRNA:   3'- -GGUGCCGuUGCGaauucaUGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 1135 0.66 0.965422
Target:  5'- aCCAgCGGCGGCGCcucGGcGCGcGGCUc -3'
miRNA:   3'- -GGU-GCCGUUGCGaauUCaUGC-CCGGc -5'
6671 5' -53.7 NC_001847.1 + 32334 0.66 0.965422
Target:  5'- gCGCGGCGcgGCGCg-GAGg--GGGCCc -3'
miRNA:   3'- gGUGCCGU--UGCGaaUUCaugCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 57767 0.66 0.965422
Target:  5'- gCCACGGgGcUGCU--GGUGCucgccGGGCUGg -3'
miRNA:   3'- -GGUGCCgUuGCGAauUCAUG-----CCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 76691 0.66 0.965422
Target:  5'- aCGCGcGCGGCGCUgcggcuGGaAauGGCCGa -3'
miRNA:   3'- gGUGC-CGUUGCGAau----UCaUgcCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 107140 0.66 0.965422
Target:  5'- gCGCGGCAcgccgcGCGCUgcAGcGCGGcCCa -3'
miRNA:   3'- gGUGCCGU------UGCGAauUCaUGCCcGGc -5'
6671 5' -53.7 NC_001847.1 + 58459 0.66 0.965422
Target:  5'- gCCGCaGCGccGCGCgcgUGA--ACGGGUCGa -3'
miRNA:   3'- -GGUGcCGU--UGCGa--AUUcaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 51189 0.66 0.965422
Target:  5'- gCgACGGCcuuccuguuucGGCGCUc-GGUGCuGGCCGu -3'
miRNA:   3'- -GgUGCCG-----------UUGCGAauUCAUGcCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 28150 0.66 0.965422
Target:  5'- aCUGCaGCGACGCc-GGGUccgaggacaGCGGGCCc -3'
miRNA:   3'- -GGUGcCGUUGCGaaUUCA---------UGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 82599 0.66 0.965422
Target:  5'- cUCGCGGCGGCGCcu--GUGCGccgcgcGCUGg -3'
miRNA:   3'- -GGUGCCGUUGCGaauuCAUGCc-----CGGC- -5'
6671 5' -53.7 NC_001847.1 + 2433 0.66 0.965422
Target:  5'- cCCGCGGCGGC-Cg-----GCaGGGCCGc -3'
miRNA:   3'- -GGUGCCGUUGcGaauucaUG-CCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 105246 0.66 0.965422
Target:  5'- cCCGCGGCGGC-Cg-----GCaGGGCCGc -3'
miRNA:   3'- -GGUGCCGUUGcGaauucaUG-CCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 103948 0.66 0.965422
Target:  5'- aCCAgCGGCGGCGCcucGGcGCGcGGCUc -3'
miRNA:   3'- -GGU-GCCGUUGCGaauUCaUGC-CCGGc -5'
6671 5' -53.7 NC_001847.1 + 130963 0.66 0.965422
Target:  5'- aCUGCaGCGACGCc-GGGUccgaggacaGCGGGCCc -3'
miRNA:   3'- -GGUGcCGUUGCGaaUUCA---------UGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 63450 0.66 0.964762
Target:  5'- aCCGCGcaGACGCggacgcgGCGGGCCu -3'
miRNA:   3'- -GGUGCcgUUGCGaauuca-UGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 117527 0.66 0.963414
Target:  5'- gCGCGGCGACGaCgaggccGUgcgcaaccccuuuccGCGGGCCc -3'
miRNA:   3'- gGUGCCGUUGC-Gaauu--CA---------------UGCCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.