miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6672 5' -62.3 NC_001847.1 + 35937 0.65 0.648166
Target:  5'- cGG-CGCGCCGCCGcgcggccgccucgcGCgAGGACCa--- -3'
miRNA:   3'- -CCaGCGCGGCGGC--------------CGgUCUUGGccag -5'
6672 5' -62.3 NC_001847.1 + 124239 0.66 0.641299
Target:  5'- cGGUaguacCGCGCCGCCaccagcuGCCGcAGgCGGUCu -3'
miRNA:   3'- -CCA-----GCGCGGCGGc------CGGUcUUgGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 34529 0.66 0.641299
Target:  5'- cGGUCGCcaggGCCcgaGCCuGGCCGGGcuGCuCGGcCg -3'
miRNA:   3'- -CCAGCG----CGG---CGG-CCGGUCU--UG-GCCaG- -5'
6672 5' -62.3 NC_001847.1 + 81227 0.66 0.641299
Target:  5'- cGUCGcCGUCGCCuccGGgCGGGGCCG-UCg -3'
miRNA:   3'- cCAGC-GCGGCGG---CCgGUCUUGGCcAG- -5'
6672 5' -62.3 NC_001847.1 + 54300 0.66 0.641299
Target:  5'- --gCGCGCCGCCGcCCGGAucuGCCcccccaaGUCg -3'
miRNA:   3'- ccaGCGCGGCGGCcGGUCU---UGGc------CAG- -5'
6672 5' -62.3 NC_001847.1 + 77637 0.66 0.641299
Target:  5'- cGG-CGCGCCGCCcguggaGGCCuucGACgCGGg- -3'
miRNA:   3'- -CCaGCGCGGCGG------CCGGuc-UUG-GCCag -5'
6672 5' -62.3 NC_001847.1 + 67206 0.66 0.641299
Target:  5'- cGcCGUGCCGagCGGCgGGcGCgCGGUCg -3'
miRNA:   3'- cCaGCGCGGCg-GCCGgUCuUG-GCCAG- -5'
6672 5' -62.3 NC_001847.1 + 2345 0.66 0.641299
Target:  5'- cGGcUCcCGCCgcGCCGGCCc-GGCCGcGUCg -3'
miRNA:   3'- -CC-AGcGCGG--CGGCCGGucUUGGC-CAG- -5'
6672 5' -62.3 NC_001847.1 + 15017 0.66 0.641299
Target:  5'- cGGUgGgGCCGCgCGaGCCGcGGccGCCGGg- -3'
miRNA:   3'- -CCAgCgCGGCG-GC-CGGU-CU--UGGCCag -5'
6672 5' -62.3 NC_001847.1 + 65501 0.66 0.641299
Target:  5'- gGGUCGCGgCG-CGGCUGGGACuCGcGcUCu -3'
miRNA:   3'- -CCAGCGCgGCgGCCGGUCUUG-GC-C-AG- -5'
6672 5' -62.3 NC_001847.1 + 24250 0.66 0.641299
Target:  5'- cGcCGCGCgGCgGGCgAGAGCauGUCc -3'
miRNA:   3'- cCaGCGCGgCGgCCGgUCUUGgcCAG- -5'
6672 5' -62.3 NC_001847.1 + 70297 0.66 0.641299
Target:  5'- gGGUCGCgGCgCGCCGcGCUGGucUCGGa- -3'
miRNA:   3'- -CCAGCG-CG-GCGGC-CGGUCuuGGCCag -5'
6672 5' -62.3 NC_001847.1 + 75824 0.66 0.641299
Target:  5'- uGGUacgGCGCCGCCGGCgCcGcGCCuGG-Ca -3'
miRNA:   3'- -CCAg--CGCGGCGGCCG-GuCuUGG-CCaG- -5'
6672 5' -62.3 NC_001847.1 + 61796 0.66 0.641299
Target:  5'- gGGcCGgGUCGCCcuGGCCAuggucGAACaugaGGUCg -3'
miRNA:   3'- -CCaGCgCGGCGG--CCGGU-----CUUGg---CCAG- -5'
6672 5' -62.3 NC_001847.1 + 13146 0.66 0.641299
Target:  5'- cGGUCGCGUUgcgacccaGCUGcGCCgAGAcguGCgGGUCg -3'
miRNA:   3'- -CCAGCGCGG--------CGGC-CGG-UCU---UGgCCAG- -5'
6672 5' -62.3 NC_001847.1 + 123488 0.66 0.641299
Target:  5'- cGGcUgGgGCCGCCgcaagcggGGCCGGGGCCaGGg- -3'
miRNA:   3'- -CC-AgCgCGGCGG--------CCGGUCUUGG-CCag -5'
6672 5' -62.3 NC_001847.1 + 68652 0.66 0.641299
Target:  5'- --cCGCGCCGCUGGCC-GAcacgcacgacguGCCGcgcacaaaaGUCa -3'
miRNA:   3'- ccaGCGCGGCGGCCGGuCU------------UGGC---------CAG- -5'
6672 5' -62.3 NC_001847.1 + 105158 0.66 0.641299
Target:  5'- cGGcUCcCGCCgcGCCGGCCc-GGCCGcGUCg -3'
miRNA:   3'- -CC-AGcGCGG--CGGCCGGucUUGGC-CAG- -5'
6672 5' -62.3 NC_001847.1 + 28055 0.66 0.640318
Target:  5'- ---gGCGCUGCUGG-CGGAAaaccugcCCGGUCu -3'
miRNA:   3'- ccagCGCGGCGGCCgGUCUU-------GGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 133975 0.66 0.640318
Target:  5'- cGGUggccuucUGCGCgGCCGcgcuGCCGGAGCCGcG-Cg -3'
miRNA:   3'- -CCA-------GCGCGgCGGC----CGGUCUUGGC-CaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.