miRNA display CGI


Results 1 - 20 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 5' -68.1 NC_001847.1 + 132015 0.66 0.370856
Target:  5'- uGCUCGC-GGgGCUgCUCGUaaaGGCGCUc -3'
miRNA:   3'- gCGGGCGaCCgCGAgGGGCG---CCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 113511 0.66 0.370856
Target:  5'- gCGCCCG--GGCGCggCCCGCGccggccaaGCGCc -3'
miRNA:   3'- -GCGGGCgaCCGCGagGGGCGC--------CGCGa -5'
6674 5' -68.1 NC_001847.1 + 66847 0.66 0.370856
Target:  5'- aCGCCaucgcgaagaUGCUGGCaGCUCgguCCCGCucGCGCg -3'
miRNA:   3'- -GCGG----------GCGACCG-CGAG---GGGCGc-CGCGa -5'
6674 5' -68.1 NC_001847.1 + 28497 0.66 0.370856
Target:  5'- aCGCCUuCUGGCGaggcguggCCCgGCaGCGCg -3'
miRNA:   3'- -GCGGGcGACCGCga------GGGgCGcCGCGa -5'
6674 5' -68.1 NC_001847.1 + 93776 0.66 0.370856
Target:  5'- gGCCCGgccgccgcUUGGCugGUUCCgCGCGGcCGCg -3'
miRNA:   3'- gCGGGC--------GACCG--CGAGGgGCGCC-GCGa -5'
6674 5' -68.1 NC_001847.1 + 15553 0.66 0.370856
Target:  5'- uCGCCgGgUGGCGCgggggaaCCCCcaucggcggcagGCGGCgGCUc -3'
miRNA:   3'- -GCGGgCgACCGCGa------GGGG------------CGCCG-CGA- -5'
6674 5' -68.1 NC_001847.1 + 54920 0.66 0.370856
Target:  5'- aGCUCGCgggGGUcuugagcgcccuGCgCUUCGCGGCGCa -3'
miRNA:   3'- gCGGGCGa--CCG------------CGaGGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 10698 0.66 0.370856
Target:  5'- gCGCCCG--GGCGCggCCCGCGccggccaaGCGCc -3'
miRNA:   3'- -GCGGGCgaCCGCGagGGGCGC--------CGCGa -5'
6674 5' -68.1 NC_001847.1 + 134862 0.66 0.370856
Target:  5'- gCGCCCGCgcgGGCucgGCggCCCC-CGG-GCUc -3'
miRNA:   3'- -GCGGGCGa--CCG---CGa-GGGGcGCCgCGA- -5'
6674 5' -68.1 NC_001847.1 + 81136 0.66 0.370856
Target:  5'- aGCUCGCUGaccGCGUagagCCaaCGCGGCGCc -3'
miRNA:   3'- gCGGGCGAC---CGCGa---GGg-GCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 131310 0.66 0.370856
Target:  5'- aCGCCUuCUGGCGaggcguggCCCgGCaGCGCg -3'
miRNA:   3'- -GCGGGcGACCGCga------GGGgCGcCGCGa -5'
6674 5' -68.1 NC_001847.1 + 33475 0.66 0.370856
Target:  5'- gGCUCGCUucgaGGCGaUgUCCGCGGCGg- -3'
miRNA:   3'- gCGGGCGA----CCGCgAgGGGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 129948 0.66 0.370856
Target:  5'- gGCgCGCUuGcCGCg-CUCGCGGCGCUg -3'
miRNA:   3'- gCGgGCGAcC-GCGagGGGCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 4926 0.66 0.370856
Target:  5'- gGgCCGCc-GCGCUUCCCGCGcccuccGCGCc -3'
miRNA:   3'- gCgGGCGacCGCGAGGGGCGC------CGCGa -5'
6674 5' -68.1 NC_001847.1 + 32049 0.66 0.370856
Target:  5'- gCGCCCGCgcgGGCucgGCggCCCC-CGG-GCUc -3'
miRNA:   3'- -GCGGGCGa--CCG---CGa-GGGGcGCCgCGA- -5'
6674 5' -68.1 NC_001847.1 + 77532 0.66 0.370099
Target:  5'- uGCCUGCgagcgcgagggcgUGGCGCacccucgugcgcUUUCCGCGGcCGCg -3'
miRNA:   3'- gCGGGCG-------------ACCGCG------------AGGGGCGCC-GCGa -5'
6674 5' -68.1 NC_001847.1 + 102815 0.66 0.370099
Target:  5'- gGCCCGCgaucGcGUGUUCCagcgggucccguuCCGCGGCGg- -3'
miRNA:   3'- gCGGGCGa---C-CGCGAGG-------------GGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 94092 0.66 0.366331
Target:  5'- uGCCCGUgcagauuuugcauGUGCUaaaCgCCGCGGCGCg -3'
miRNA:   3'- gCGGGCGac-----------CGCGAg--G-GGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 74017 0.66 0.363335
Target:  5'- aCGCUgCGCcGGCGCgugCCgcuggcggaCGUGGCGCUg -3'
miRNA:   3'- -GCGG-GCGaCCGCGa--GGg--------GCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 83729 0.66 0.363335
Target:  5'- aGCCCGC---CGCUCaCUCG-GGCGCUa -3'
miRNA:   3'- gCGGGCGaccGCGAG-GGGCgCCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.