miRNA display CGI


Results 1 - 20 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 110755 0.65 0.583972
Target:  5'- cGCGCGCCGcgccGGAGuUCGCGCaugcggguuuuuagGGCCCu-- -3'
miRNA:   3'- -UGCGCGGC----UCUC-GGCGUG--------------UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 39851 0.65 0.583972
Target:  5'- cGCGCGCC-AGccGCCGguaggcuucguccaCGCGGCCCGg- -3'
miRNA:   3'- -UGCGCGGcUCu-CGGC--------------GUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 103742 0.66 0.577054
Target:  5'- -gGCGCCGGGaAGCC-CG-AGCCCGc- -3'
miRNA:   3'- ugCGCGGCUC-UCGGcGUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 58082 0.66 0.577054
Target:  5'- cGCGCGCCGcagcgGGuGCCGCGCcGCUa--- -3'
miRNA:   3'- -UGCGCGGC-----UCuCGGCGUGuCGGgcau -5'
6675 5' -62.6 NC_001847.1 + 110192 0.66 0.577054
Target:  5'- uGCGCcaccuGCCGGGcaAGCCGCcGCAGCUgcUGUAc -3'
miRNA:   3'- -UGCG-----CGGCUC--UCGGCG-UGUCGG--GCAU- -5'
6675 5' -62.6 NC_001847.1 + 73251 0.66 0.577054
Target:  5'- gGCGCGCuCGAG-GCCGUGCGcGCacgCCGa- -3'
miRNA:   3'- -UGCGCG-GCUCuCGGCGUGU-CG---GGCau -5'
6675 5' -62.6 NC_001847.1 + 30479 0.66 0.577054
Target:  5'- -aGCGCUGGGAcGCgaucgGCGCGGCCCu-- -3'
miRNA:   3'- ugCGCGGCUCU-CGg----CGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 97574 0.66 0.577054
Target:  5'- uCGUGuCCGuGAGCUgGCGCcGCCCGa- -3'
miRNA:   3'- uGCGC-GGCuCUCGG-CGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 32279 0.66 0.577054
Target:  5'- uCGCGCCGuccGcGUgGCGCGGCCCc-- -3'
miRNA:   3'- uGCGCGGCu--CuCGgCGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 132951 0.66 0.577054
Target:  5'- cCGCcCCGAGGucGCgGCGCGGCUCGc- -3'
miRNA:   3'- uGCGcGGCUCU--CGgCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 3421 0.66 0.577054
Target:  5'- -aGC-CCGGGGGCgccagGCGCAGCCCa-- -3'
miRNA:   3'- ugCGcGGCUCUCGg----CGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 64472 0.66 0.577054
Target:  5'- -gGCGCgGGGGGCCgaagcagggaGCACAgagacGCCCGa- -3'
miRNA:   3'- ugCGCGgCUCUCGG----------CGUGU-----CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 49591 0.66 0.577054
Target:  5'- gACG-GCCGAGGacauuuGCCGCGCAGuaggcgcgaguCCCGa- -3'
miRNA:   3'- -UGCgCGGCUCU------CGGCGUGUC-----------GGGCau -5'
6675 5' -62.6 NC_001847.1 + 30138 0.66 0.577054
Target:  5'- cCGCcCCGAGGucGCgGCGCGGCUCGc- -3'
miRNA:   3'- uGCGcGGCUCU--CGgCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 110686 0.66 0.577054
Target:  5'- uCGgGCCGuuuGGGCCGC-CAGaCCCa-- -3'
miRNA:   3'- uGCgCGGCu--CUCGGCGuGUC-GGGcau -5'
6675 5' -62.6 NC_001847.1 + 67976 0.66 0.577054
Target:  5'- uCGcCGCCGAGAG-CGgGgGGCCUGUc -3'
miRNA:   3'- uGC-GCGGCUCUCgGCgUgUCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 105690 0.66 0.577054
Target:  5'- gACGCGCgGGccGCCGCGCcGCgCGUc -3'
miRNA:   3'- -UGCGCGgCUcuCGGCGUGuCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 5626 0.66 0.577054
Target:  5'- -gGCGCCGcGGucCCGCGCgcgccaaagAGCCCGUc -3'
miRNA:   3'- ugCGCGGC-UCucGGCGUG---------UCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 63193 0.66 0.577054
Target:  5'- cCGCGCCacGAcGuGCgGCGCGGCgCCGUu -3'
miRNA:   3'- uGCGCGG--CU-CuCGgCGUGUCG-GGCAu -5'
6675 5' -62.6 NC_001847.1 + 121650 0.66 0.577054
Target:  5'- gGCGCGCacuucgcgGAaGGCCGCcgcugugggguGCGGCCCGa- -3'
miRNA:   3'- -UGCGCGg-------CUcUCGGCG-----------UGUCGGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.