Results 1 - 20 of 554 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6675 | 5' | -62.6 | NC_001847.1 | + | 110755 | 0.65 | 0.583972 |
Target: 5'- cGCGCGCCGcgccGGAGuUCGCGCaugcggguuuuuagGGCCCu-- -3' miRNA: 3'- -UGCGCGGC----UCUC-GGCGUG--------------UCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 39851 | 0.65 | 0.583972 |
Target: 5'- cGCGCGCC-AGccGCCGguaggcuucguccaCGCGGCCCGg- -3' miRNA: 3'- -UGCGCGGcUCu-CGGC--------------GUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 132951 | 0.66 | 0.577054 |
Target: 5'- cCGCcCCGAGGucGCgGCGCGGCUCGc- -3' miRNA: 3'- uGCGcGGCUCU--CGgCGUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 110192 | 0.66 | 0.577054 |
Target: 5'- uGCGCcaccuGCCGGGcaAGCCGCcGCAGCUgcUGUAc -3' miRNA: 3'- -UGCG-----CGGCUC--UCGGCG-UGUCGG--GCAU- -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 3421 | 0.66 | 0.577054 |
Target: 5'- -aGC-CCGGGGGCgccagGCGCAGCCCa-- -3' miRNA: 3'- ugCGcGGCUCUCGg----CGUGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 32279 | 0.66 | 0.577054 |
Target: 5'- uCGCGCCGuccGcGUgGCGCGGCCCc-- -3' miRNA: 3'- uGCGCGGCu--CuCGgCGUGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 110686 | 0.66 | 0.577054 |
Target: 5'- uCGgGCCGuuuGGGCCGC-CAGaCCCa-- -3' miRNA: 3'- uGCgCGGCu--CUCGGCGuGUC-GGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 97574 | 0.66 | 0.577054 |
Target: 5'- uCGUGuCCGuGAGCUgGCGCcGCCCGa- -3' miRNA: 3'- uGCGC-GGCuCUCGG-CGUGuCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 5626 | 0.66 | 0.577054 |
Target: 5'- -gGCGCCGcGGucCCGCGCgcgccaaagAGCCCGUc -3' miRNA: 3'- ugCGCGGC-UCucGGCGUG---------UCGGGCAu -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 73251 | 0.66 | 0.577054 |
Target: 5'- gGCGCGCuCGAG-GCCGUGCGcGCacgCCGa- -3' miRNA: 3'- -UGCGCG-GCUCuCGGCGUGU-CG---GGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 58082 | 0.66 | 0.577054 |
Target: 5'- cGCGCGCCGcagcgGGuGCCGCGCcGCUa--- -3' miRNA: 3'- -UGCGCGGC-----UCuCGGCGUGuCGGgcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 121650 | 0.66 | 0.577054 |
Target: 5'- gGCGCGCacuucgcgGAaGGCCGCcgcugugggguGCGGCCCGa- -3' miRNA: 3'- -UGCGCGg-------CUcUCGGCG-----------UGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 103742 | 0.66 | 0.577054 |
Target: 5'- -gGCGCCGGGaAGCC-CG-AGCCCGc- -3' miRNA: 3'- ugCGCGGCUC-UCGGcGUgUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 63193 | 0.66 | 0.577054 |
Target: 5'- cCGCGCCacGAcGuGCgGCGCGGCgCCGUu -3' miRNA: 3'- uGCGCGG--CU-CuCGgCGUGUCG-GGCAu -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 67976 | 0.66 | 0.577054 |
Target: 5'- uCGcCGCCGAGAG-CGgGgGGCCUGUc -3' miRNA: 3'- uGC-GCGGCUCUCgGCgUgUCGGGCAu -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 105690 | 0.66 | 0.577054 |
Target: 5'- gACGCGCgGGccGCCGCGCcGCgCGUc -3' miRNA: 3'- -UGCGCGgCUcuCGGCGUGuCGgGCAu -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 30479 | 0.66 | 0.577054 |
Target: 5'- -aGCGCUGGGAcGCgaucgGCGCGGCCCu-- -3' miRNA: 3'- ugCGCGGCUCU-CGg----CGUGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 64472 | 0.66 | 0.577054 |
Target: 5'- -gGCGCgGGGGGCCgaagcagggaGCACAgagacGCCCGa- -3' miRNA: 3'- ugCGCGgCUCUCGG----------CGUGU-----CGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 49591 | 0.66 | 0.577054 |
Target: 5'- gACG-GCCGAGGacauuuGCCGCGCAGuaggcgcgaguCCCGa- -3' miRNA: 3'- -UGCgCGGCUCU------CGGCGUGUC-----------GGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 30138 | 0.66 | 0.577054 |
Target: 5'- cCGCcCCGAGGucGCgGCGCGGCUCGc- -3' miRNA: 3'- uGCGcGGCUCU--CGgCGUGUCGGGCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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