miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 129217 0.66 0.783944
Target:  5'- uUGCUCGCGGcGAccgcuaaugggcccgGGCGCACAAucugcgacggcgcGGCCGc -3'
miRNA:   3'- gAUGGGCGUC-CU---------------CCGUGUGUU-------------CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 130702 0.66 0.781169
Target:  5'- -gACgUCGC-GGAGuGCGC-CGAGGCCGa -3'
miRNA:   3'- gaUG-GGCGuCCUC-CGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 30425 0.66 0.781169
Target:  5'- -aGCUCGUGgcgggcgcGGAGGCGC-CGGGGCUg -3'
miRNA:   3'- gaUGGGCGU--------CCUCCGUGuGUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 63689 0.66 0.781169
Target:  5'- aUGCCC-CcGGAaGCGCcCGGGGCCAa -3'
miRNA:   3'- gAUGGGcGuCCUcCGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 99921 0.66 0.781169
Target:  5'- -cGCCUGCAGcacguccGCGCGCAGGGCg- -3'
miRNA:   3'- gaUGGGCGUCcuc----CGUGUGUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 27889 0.66 0.781169
Target:  5'- -gACgUCGC-GGAGuGCGC-CGAGGCCGa -3'
miRNA:   3'- gaUG-GGCGuCCUC-CGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 109703 0.66 0.781169
Target:  5'- -gGCCUGCAGucGGCGCugAAGuaCGa -3'
miRNA:   3'- gaUGGGCGUCcuCCGUGugUUCcgGU- -5'
6679 3' -58.4 NC_001847.1 + 96477 0.66 0.781169
Target:  5'- -gGCuuGCGGGcGGCGgGCGucGCCAc -3'
miRNA:   3'- gaUGggCGUCCuCCGUgUGUucCGGU- -5'
6679 3' -58.4 NC_001847.1 + 34445 0.66 0.781169
Target:  5'- -gGgCCGCGGacGAGGC-CGCGGuGGCCGc -3'
miRNA:   3'- gaUgGGCGUC--CUCCGuGUGUU-CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 40965 0.66 0.781169
Target:  5'- aCUGCCCGCGcGAGGCGgcCGCGcccAGcaGCCGc -3'
miRNA:   3'- -GAUGGGCGUcCUCCGU--GUGU---UC--CGGU- -5'
6679 3' -58.4 NC_001847.1 + 91455 0.66 0.781169
Target:  5'- ----gCGCGGGAGcgucCACACGAGGUCGu -3'
miRNA:   3'- gauggGCGUCCUCc---GUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 81582 0.66 0.780241
Target:  5'- -gGCCgGCggcuacGGGAGcgucguuGUGCACGAGGCCGc -3'
miRNA:   3'- gaUGGgCG------UCCUC-------CGUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 114546 0.66 0.771831
Target:  5'- uUAgCCGCgAGGGcaugcuGGUACACAGcGGCCu -3'
miRNA:   3'- gAUgGGCG-UCCU------CCGUGUGUU-CCGGu -5'
6679 3' -58.4 NC_001847.1 + 24180 0.66 0.771831
Target:  5'- gUACUCGCacAGcGuGGCGCugGuGGCCAu -3'
miRNA:   3'- gAUGGGCG--UC-CuCCGUGugUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 87668 0.66 0.771831
Target:  5'- gCUGCgCCGCAuGGcccGGGCGCugG-GGCUg -3'
miRNA:   3'- -GAUG-GGCGU-CC---UCCGUGugUuCCGGu -5'
6679 3' -58.4 NC_001847.1 + 111263 0.66 0.771831
Target:  5'- -gGCgCCGgGucGGAGGCgGCGCcGGGCCGg -3'
miRNA:   3'- gaUG-GGCgU--CCUCCG-UGUGuUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 2432 0.66 0.771831
Target:  5'- --cCCCGC-GGcGGCcgGCAGGGCCGc -3'
miRNA:   3'- gauGGGCGuCCuCCGugUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 75120 0.66 0.771831
Target:  5'- uUGCCCGagaAGGcccGGGCcccGC-CGGGGCCGg -3'
miRNA:   3'- gAUGGGCg--UCC---UCCG---UGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 105245 0.66 0.771831
Target:  5'- --cCCCGC-GGcGGCcgGCAGGGCCGc -3'
miRNA:   3'- gauGGGCGuCCuCCGugUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 80849 0.66 0.771831
Target:  5'- -gAUCCGgGcGGcGGCGCGCGucgAGGCCGu -3'
miRNA:   3'- gaUGGGCgU-CCuCCGUGUGU---UCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.