miRNA display CGI

Results 1 - 20 of 1312 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6680	5'	-63	NC_001847.1	+	74438	0.66	0.600227
	Target:  5'- gUCGUGGCGGcgcacgacgccGUGGCGCugcaguacgaGCGGGgGCUg -3' miRNA:   3'- gAGCGUCGCU-----------CGCCGCG----------CGCUCgCGG- -5'
6680	5'	-63	NC_001847.1	+	35930	0.66	0.600227
	Target:  5'- uUUGUGGCGGcgcgccgccgcGCGGCcgccucGCGCGAggaccacgaggGCGCCa -3' miRNA:   3'- gAGCGUCGCU-----------CGCCG------CGCGCU-----------CGCGG- -5'
6680	5'	-63	NC_001847.1	+	84302	0.66	0.600227
	Target:  5'- aUCacCAGCGcccccCGGCGCGgGcAGCGCCc -3' miRNA:   3'- gAGc-GUCGCuc---GCCGCGCgC-UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	103373	0.66	0.600227
	Target:  5'- -cCGUguuGGCcGGC-GCGCGCGGGUGCa -3' miRNA:   3'- gaGCG---UCGcUCGcCGCGCGCUCGCGg -5'
6680	5'	-63	NC_001847.1	+	5809	0.66	0.600227
	Target:  5'- -gCGCuuGCGcuUGGCGCGCcGGGUGCg -3' miRNA:   3'- gaGCGu-CGCucGCCGCGCG-CUCGCGg -5'
6680	5'	-63	NC_001847.1	+	22804	0.66	0.600227
	Target:  5'- gCUCGUAgauGCGGGcCGGCG-GCGGcCGCUc -3' miRNA:   3'- -GAGCGU---CGCUC-GCCGCgCGCUcGCGG- -5'
6680	5'	-63	NC_001847.1	+	105610	0.66	0.600227
	Target:  5'- aCUCG-AGCGcccGCGcCGCGCGGGCGa- -3' miRNA:   3'- -GAGCgUCGCu--CGCcGCGCGCUCGCgg -5'
6680	5'	-63	NC_001847.1	+	37358	0.66	0.600227
	Target:  5'- -cCGUGGCgGAGCuGGCGCgucucauccccgGCGGuGCGCUg -3' miRNA:   3'- gaGCGUCG-CUCG-CCGCG------------CGCU-CGCGG- -5'
6680	5'	-63	NC_001847.1	+	131955	0.66	0.600227
	Target:  5'- aUgGCGGCGA-CGGCG-GCGAGaGCg -3' miRNA:   3'- gAgCGUCGCUcGCCGCgCGCUCgCGg -5'
6680	5'	-63	NC_001847.1	+	89316	0.66	0.600227
	Target:  5'- -cCGCccAGCGAGUGGC-C-CGGGCGgCa -3' miRNA:   3'- gaGCG--UCGCUCGCCGcGcGCUCGCgG- -5'
6680	5'	-63	NC_001847.1	+	73935	0.66	0.600227
	Target:  5'- -gCGCAGCcGGCGcGUaccugGCGCGcGCGCa -3' miRNA:   3'- gaGCGUCGcUCGC-CG-----CGCGCuCGCGg -5'
6680	5'	-63	NC_001847.1	+	57949	0.66	0.600227
	Target:  5'- -cCGUcGCGGGCaGCaGCGCGgucgcGGCGUCg -3' miRNA:   3'- gaGCGuCGCUCGcCG-CGCGC-----UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	76474	0.66	0.600227
	Target:  5'- -gCGCuuccacGGC-AGCGGCGCcUGcAGCGCCu -3' miRNA:   3'- gaGCG------UCGcUCGCCGCGcGC-UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	11424	0.66	0.600227
	Target:  5'- gUCGCcgAGCGAaguGCuGcCGUGCGAccccGCGCCa -3' miRNA:   3'- gAGCG--UCGCU---CGcC-GCGCGCU----CGCGG- -5'
6680	5'	-63	NC_001847.1	+	63858	0.66	0.600227
	Target:  5'- -gCGCGGgGGGCGcaUGCGCGAcggcugggacGCGCUg -3' miRNA:   3'- gaGCGUCgCUCGCc-GCGCGCU----------CGCGG- -5'
6680	5'	-63	NC_001847.1	+	133214	0.66	0.600227
	Target:  5'- --gGCGGCccGAGUGGC-CGCc-GCGCCg -3' miRNA:   3'- gagCGUCG--CUCGCCGcGCGcuCGCGG- -5'
6680	5'	-63	NC_001847.1	+	80536	0.66	0.600227
	Target:  5'- --aGUAGCGGGCGGauuGCuCGcccacGGCGCCc -3' miRNA:   3'- gagCGUCGCUCGCCg--CGcGC-----UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	48195	0.66	0.600227
	Target:  5'- -gUGCcGCGccGGCGGCcagggccgaggaGCGC-AGCGCCg -3' miRNA:   3'- gaGCGuCGC--UCGCCG------------CGCGcUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	38274	0.66	0.600227
	Target:  5'- -cCGCAcgcGCGGGCGGCG-GCaGGUGgCg -3' miRNA:   3'- gaGCGU---CGCUCGCCGCgCGcUCGCgG- -5'
6680	5'	-63	NC_001847.1	+	46445	0.66	0.600227
	Target:  5'- -gCGCGGCG-GUGGgGaUGCGcGCGCg -3' miRNA:   3'- gaGCGUCGCuCGCCgC-GCGCuCGCGg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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