miRNA display CGI


Results 1 - 20 of 1312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 5' -63 NC_001847.1 + 84302 0.66 0.600227
Target:  5'- aUCacCAGCGcccccCGGCGCGgGcAGCGCCc -3'
miRNA:   3'- gAGc-GUCGCuc---GCCGCGCgC-UCGCGG- -5'
6680 5' -63 NC_001847.1 + 46445 0.66 0.600227
Target:  5'- -gCGCGGCG-GUGGgGaUGCGcGCGCg -3'
miRNA:   3'- gaGCGUCGCuCGCCgC-GCGCuCGCGg -5'
6680 5' -63 NC_001847.1 + 37358 0.66 0.600227
Target:  5'- -cCGUGGCgGAGCuGGCGCgucucauccccgGCGGuGCGCUg -3'
miRNA:   3'- gaGCGUCG-CUCG-CCGCG------------CGCU-CGCGG- -5'
6680 5' -63 NC_001847.1 + 57949 0.66 0.600227
Target:  5'- -cCGUcGCGGGCaGCaGCGCGgucgcGGCGUCg -3'
miRNA:   3'- gaGCGuCGCUCGcCG-CGCGC-----UCGCGG- -5'
6680 5' -63 NC_001847.1 + 5809 0.66 0.600227
Target:  5'- -gCGCuuGCGcuUGGCGCGCcGGGUGCg -3'
miRNA:   3'- gaGCGu-CGCucGCCGCGCG-CUCGCGg -5'
6680 5' -63 NC_001847.1 + 38274 0.66 0.600227
Target:  5'- -cCGCAcgcGCGGGCGGCG-GCaGGUGgCg -3'
miRNA:   3'- gaGCGU---CGCUCGCCGCgCGcUCGCgG- -5'
6680 5' -63 NC_001847.1 + 80536 0.66 0.600227
Target:  5'- --aGUAGCGGGCGGauuGCuCGcccacGGCGCCc -3'
miRNA:   3'- gagCGUCGCUCGCCg--CGcGC-----UCGCGG- -5'
6680 5' -63 NC_001847.1 + 105610 0.66 0.600227
Target:  5'- aCUCG-AGCGcccGCGcCGCGCGGGCGa- -3'
miRNA:   3'- -GAGCgUCGCu--CGCcGCGCGCUCGCgg -5'
6680 5' -63 NC_001847.1 + 76474 0.66 0.600227
Target:  5'- -gCGCuuccacGGC-AGCGGCGCcUGcAGCGCCu -3'
miRNA:   3'- gaGCG------UCGcUCGCCGCGcGC-UCGCGG- -5'
6680 5' -63 NC_001847.1 + 131955 0.66 0.600227
Target:  5'- aUgGCGGCGA-CGGCG-GCGAGaGCg -3'
miRNA:   3'- gAgCGUCGCUcGCCGCgCGCUCgCGg -5'
6680 5' -63 NC_001847.1 + 48195 0.66 0.600227
Target:  5'- -gUGCcGCGccGGCGGCcagggccgaggaGCGC-AGCGCCg -3'
miRNA:   3'- gaGCGuCGC--UCGCCG------------CGCGcUCGCGG- -5'
6680 5' -63 NC_001847.1 + 63858 0.66 0.600227
Target:  5'- -gCGCGGgGGGCGcaUGCGCGAcggcugggacGCGCUg -3'
miRNA:   3'- gaGCGUCgCUCGCc-GCGCGCU----------CGCGG- -5'
6680 5' -63 NC_001847.1 + 74438 0.66 0.600227
Target:  5'- gUCGUGGCGGcgcacgacgccGUGGCGCugcaguacgaGCGGGgGCUg -3'
miRNA:   3'- gAGCGUCGCU-----------CGCCGCG----------CGCUCgCGG- -5'
6680 5' -63 NC_001847.1 + 133214 0.66 0.600227
Target:  5'- --gGCGGCccGAGUGGC-CGCc-GCGCCg -3'
miRNA:   3'- gagCGUCG--CUCGCCGcGCGcuCGCGG- -5'
6680 5' -63 NC_001847.1 + 22804 0.66 0.600227
Target:  5'- gCUCGUAgauGCGGGcCGGCG-GCGGcCGCUc -3'
miRNA:   3'- -GAGCGU---CGCUC-GCCGCgCGCUcGCGG- -5'
6680 5' -63 NC_001847.1 + 11424 0.66 0.600227
Target:  5'- gUCGCcgAGCGAaguGCuGcCGUGCGAccccGCGCCa -3'
miRNA:   3'- gAGCG--UCGCU---CGcC-GCGCGCU----CGCGG- -5'
6680 5' -63 NC_001847.1 + 89316 0.66 0.600227
Target:  5'- -cCGCccAGCGAGUGGC-C-CGGGCGgCa -3'
miRNA:   3'- gaGCG--UCGCUCGCCGcGcGCUCGCgG- -5'
6680 5' -63 NC_001847.1 + 103373 0.66 0.600227
Target:  5'- -cCGUguuGGCcGGC-GCGCGCGGGUGCa -3'
miRNA:   3'- gaGCG---UCGcUCGcCGCGCGCUCGCGg -5'
6680 5' -63 NC_001847.1 + 35930 0.66 0.600227
Target:  5'- uUUGUGGCGGcgcgccgccgcGCGGCcgccucGCGCGAggaccacgaggGCGCCa -3'
miRNA:   3'- gAGCGUCGCU-----------CGCCG------CGCGCU-----------CGCGG- -5'
6680 5' -63 NC_001847.1 + 73935 0.66 0.600227
Target:  5'- -gCGCAGCcGGCGcGUaccugGCGCGcGCGCa -3'
miRNA:   3'- gaGCGUCGcUCGC-CG-----CGCGCuCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.