miRNA display CGI


Results 1 - 20 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 3' -56.6 NC_001847.1 + 61982 0.66 0.888925
Target:  5'- cGCGGCGGgcAuaaugggcccgaagaGCgGCGCGgggccCUGCgGCCGu -3'
miRNA:   3'- -CGCUGCCauU---------------UGaCGCGC-----GACG-CGGC- -5'
6681 3' -56.6 NC_001847.1 + 58672 0.66 0.886881
Target:  5'- uGCGGCGGUugg--GCGgGCggcaggcuggccaugGCGCUGg -3'
miRNA:   3'- -CGCUGCCAuuugaCGCgCGa--------------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 60736 0.66 0.886194
Target:  5'- uCGGCGGcccGCgcGCGCGCgGCgGCCGc -3'
miRNA:   3'- cGCUGCCauuUGa-CGCGCGaCG-CGGC- -5'
6681 3' -56.6 NC_001847.1 + 3697 0.66 0.886194
Target:  5'- cGCGcaccACaGGUAGGCgcgGCaaucGCGC-GCGCCGg -3'
miRNA:   3'- -CGC----UG-CCAUUUGa--CG----CGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 122382 0.66 0.886194
Target:  5'- uGCgGACGGccggcGACUGCGCGCUcaucCGCa- -3'
miRNA:   3'- -CG-CUGCCau---UUGACGCGCGAc---GCGgc -5'
6681 3' -56.6 NC_001847.1 + 48483 0.66 0.886194
Target:  5'- aGCG-CGGgucGAGCgcgGCGCGCUccggggcgGCGCgGc -3'
miRNA:   3'- -CGCuGCCa--UUUGa--CGCGCGA--------CGCGgC- -5'
6681 3' -56.6 NC_001847.1 + 8091 0.66 0.886194
Target:  5'- cGCGGCG--AGAUcgGCGaCGCgGCGCCa -3'
miRNA:   3'- -CGCUGCcaUUUGa-CGC-GCGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 108447 0.66 0.886194
Target:  5'- -gGACGccGAGCUGCG-GCUGgagccCGCCGg -3'
miRNA:   3'- cgCUGCcaUUUGACGCgCGAC-----GCGGC- -5'
6681 3' -56.6 NC_001847.1 + 128804 0.66 0.886194
Target:  5'- -gGGCGGgcgGGCggGCGCGCagGCGCg- -3'
miRNA:   3'- cgCUGCCau-UUGa-CGCGCGa-CGCGgc -5'
6681 3' -56.6 NC_001847.1 + 25991 0.66 0.886194
Target:  5'- -gGGCGGgcgGGCggGCGCGCagGCGCg- -3'
miRNA:   3'- cgCUGCCau-UUGa-CGCGCGa-CGCGgc -5'
6681 3' -56.6 NC_001847.1 + 73861 0.66 0.886194
Target:  5'- cGCcGCGGUGcGCgggGCGCGUcaguucCGCCGg -3'
miRNA:   3'- -CGcUGCCAUuUGa--CGCGCGac----GCGGC- -5'
6681 3' -56.6 NC_001847.1 + 55008 0.66 0.886194
Target:  5'- gGCGGCGcUGGAguccaUGCGCGCgucggGCGCg- -3'
miRNA:   3'- -CGCUGCcAUUUg----ACGCGCGa----CGCGgc -5'
6681 3' -56.6 NC_001847.1 + 116657 0.66 0.886194
Target:  5'- cGCGGgcacgcUGGUGGcCUGCGUGUggguccgGCGCUGc -3'
miRNA:   3'- -CGCU------GCCAUUuGACGCGCGa------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 114953 0.66 0.886194
Target:  5'- -aGGCGGUGGuauucgcauACcgGCGCGCccguugccugaGCGCCGa -3'
miRNA:   3'- cgCUGCCAUU---------UGa-CGCGCGa----------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 132143 0.66 0.886194
Target:  5'- gGCGGCGcu--GCUGcCGCGCagggugGgGCCGg -3'
miRNA:   3'- -CGCUGCcauuUGAC-GCGCGa-----CgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 4166 0.66 0.886194
Target:  5'- aGCGAgCGGgccuuguuuUGGGCcGCGCGCccgUGgGCCGc -3'
miRNA:   3'- -CGCU-GCC---------AUUUGaCGCGCG---ACgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 4421 0.66 0.884123
Target:  5'- aCGGCGGcGAGC-GCGCGCcGCagggaaacgcgcacGCCGu -3'
miRNA:   3'- cGCUGCCaUUUGaCGCGCGaCG--------------CGGC- -5'
6681 3' -56.6 NC_001847.1 + 50089 0.66 0.883427
Target:  5'- gGCG-CGGccaAGGCUGcCGCGCcgggcggcguagaGCGCCGg -3'
miRNA:   3'- -CGCuGCCa--UUUGAC-GCGCGa------------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 21742 0.66 0.883427
Target:  5'- gGCGcCGGcccGC-GCGCGCgggggggccgccgGCGCCGg -3'
miRNA:   3'- -CGCuGCCauuUGaCGCGCGa------------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 124555 0.66 0.883427
Target:  5'- gGCGcCGGcccGC-GCGCGCgggggggccgccgGCGCCGg -3'
miRNA:   3'- -CGCuGCCauuUGaCGCGCGa------------CGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.