miRNA display CGI


Results 1 - 20 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 119045 0.66 0.999718
Target:  5'- cGUCACUcgagacggcgcgcgaAUCAGCGuacuGGAGgcgcccagcagAGGCGCCg -3'
miRNA:   3'- -CGGUGG---------------UAGUCGCu---UCUUa----------UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 3401 0.66 0.999689
Target:  5'- uCCGCaagCAGCGGgAGAGcagcccggGGGCGCCa -3'
miRNA:   3'- cGGUGguaGUCGCU-UCUUa-------UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 118917 0.66 0.999689
Target:  5'- gGCCgagGCCGggacGCGGAGGcUGcAACGCCg -3'
miRNA:   3'- -CGG---UGGUagu-CGCUUCUuAU-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 132867 0.66 0.999689
Target:  5'- cGCCGCCGaCGGCGGcuuc----CGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUucuuauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 8209 0.66 0.999689
Target:  5'- aGgCGCCGUgcCAGCaGAAGcagcuGCGCCa -3'
miRNA:   3'- -CgGUGGUA--GUCG-CUUCuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 66847 0.66 0.999689
Target:  5'- -aCGCCAUC-GCGAAGAugcuGGCaGCUc -3'
miRNA:   3'- cgGUGGUAGuCGCUUCUuau-UUG-CGG- -5'
6682 5' -47.6 NC_001847.1 + 66224 0.66 0.999689
Target:  5'- gGCCGCCGcgccgaaccUCAGCGcGGc---GGCGCUc -3'
miRNA:   3'- -CGGUGGU---------AGUCGCuUCuuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 3964 0.66 0.999689
Target:  5'- cGUCuCCggCGGCGAGG-----GCGCCg -3'
miRNA:   3'- -CGGuGGuaGUCGCUUCuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 133874 0.66 0.999689
Target:  5'- cGCCGCCAaCcGCuGggGGcucggcGCGCCg -3'
miRNA:   3'- -CGGUGGUaGuCG-CuuCUuauu--UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 11417 0.66 0.999689
Target:  5'- gGCCcCCGUCgccgAGCGAAGu----GCuGCCg -3'
miRNA:   3'- -CGGuGGUAG----UCGCUUCuuauuUG-CGG- -5'
6682 5' -47.6 NC_001847.1 + 14804 0.66 0.999689
Target:  5'- aCCGCag-CGGCGGAGcugcgcGGCGCCc -3'
miRNA:   3'- cGGUGguaGUCGCUUCuuau--UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 3849 0.66 0.999689
Target:  5'- cGCCGCCc-CAGaCGuAGAc--GGCGCCg -3'
miRNA:   3'- -CGGUGGuaGUC-GCuUCUuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 34896 0.66 0.999689
Target:  5'- uGCCACaAUUGGCGcuuuGGggUcu-CGCCa -3'
miRNA:   3'- -CGGUGgUAGUCGCu---UCuuAuuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 60146 0.66 0.999689
Target:  5'- cCCGCCcgcCGGCGGAcuGAGccuGGCGCCc -3'
miRNA:   3'- cGGUGGua-GUCGCUU--CUUau-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 104208 0.66 0.999689
Target:  5'- -gCGCCGUUuauGCGAAGGccuccCGCCg -3'
miRNA:   3'- cgGUGGUAGu--CGCUUCUuauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 113026 0.66 0.999689
Target:  5'- cGCCGCCG-C-GCGucug--GGACGCCg -3'
miRNA:   3'- -CGGUGGUaGuCGCuucuuaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 37481 0.66 0.999689
Target:  5'- gGCCcgGCCuggCAGCGgcGggUcuGgGCCc -3'
miRNA:   3'- -CGG--UGGua-GUCGCuuCuuAuuUgCGG- -5'
6682 5' -47.6 NC_001847.1 + 31061 0.66 0.999689
Target:  5'- cGCCGCCAaCcGCuGggGGcucggcGCGCCg -3'
miRNA:   3'- -CGGUGGUaGuCG-CuuCUuauu--UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 30054 0.66 0.999689
Target:  5'- cGCCGCCGaCGGCGGcuuc----CGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUucuuauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 103421 0.66 0.999674
Target:  5'- gGCCGCuCcgCAGCGgcGcgcggcccGCGCCu -3'
miRNA:   3'- -CGGUG-GuaGUCGCuuCuuauu---UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.