miRNA display CGI


Results 1 - 20 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 134381 0.69 0.993049
Target:  5'- cGCCGCCggCGGCGGGccggccuCGCCc -3'
miRNA:   3'- -CGGUGGuaGUCGCUUcuuauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 134158 0.75 0.881158
Target:  5'- uGCCGCCGcCGGCGGcGGAAgcccCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCU-UCUUauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 134095 0.67 0.998842
Target:  5'- cGCCGCCGcuugcUCuGGCGAgcagagguccAGAAUGGA-GCCc -3'
miRNA:   3'- -CGGUGGU-----AG-UCGCU----------UCUUAUUUgCGG- -5'
6682 5' -47.6 NC_001847.1 + 133922 0.68 0.996519
Target:  5'- gGCCugCGggCGGCGcgcgcuGGAGcuGGCGCCc -3'
miRNA:   3'- -CGGugGUa-GUCGCu-----UCUUauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 133874 0.66 0.999689
Target:  5'- cGCCGCCAaCcGCuGggGGcucggcGCGCCg -3'
miRNA:   3'- -CGGUGGUaGuCG-CuuCUuauu--UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 133874 0.69 0.99518
Target:  5'- aGCCACUA-CAGU--AGAGUAagaAACGCUg -3'
miRNA:   3'- -CGGUGGUaGUCGcuUCUUAU---UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 133532 0.67 0.99859
Target:  5'- uGCUGCCG-CGGCGcAGu----GCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuUCuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 133425 0.66 0.999607
Target:  5'- gGCCGCgGcgCGGCGgcGGcugaucGUGcucGACGCCg -3'
miRNA:   3'- -CGGUGgUa-GUCGCuuCU------UAU---UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 133284 0.68 0.997943
Target:  5'- aGCCGCgCGgugcgcucCGGCGcAGAGUGcgUGCCg -3'
miRNA:   3'- -CGGUG-GUa-------GUCGCuUCUUAUuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 133192 0.67 0.999234
Target:  5'- gGCUGCCcUCGcUGGAGGAgcucuGCGCCg -3'
miRNA:   3'- -CGGUGGuAGUcGCUUCUUauu--UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 133190 0.82 0.540709
Target:  5'- cGCCGCC--CGGCGAGGAc-GAGCGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUUCUuaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 133085 0.69 0.99518
Target:  5'- cGCCACCGcugCGGCGgcGc---GugGCCu -3'
miRNA:   3'- -CGGUGGUa--GUCGCuuCuuauUugCGG- -5'
6682 5' -47.6 NC_001847.1 + 132867 0.66 0.999689
Target:  5'- cGCCGCCGaCGGCGGcuuc----CGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUucuuauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 132724 0.72 0.969272
Target:  5'- gGCCGCCGcgggggccccUCGGgGGAGGAcgacucugggccgAGGCGCCg -3'
miRNA:   3'- -CGGUGGU----------AGUCgCUUCUUa------------UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 132596 0.73 0.937999
Target:  5'- gGCCGCCccggccCGGCGgcGG--GAGCGCCg -3'
miRNA:   3'- -CGGUGGua----GUCGCuuCUuaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 132491 0.74 0.927247
Target:  5'- aGCCGCCG--GGCGAAG-----GCGCCg -3'
miRNA:   3'- -CGGUGGUagUCGCUUCuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 132373 0.72 0.963897
Target:  5'- gGCCGCC---GGCGggGGcgccGGCGCCg -3'
miRNA:   3'- -CGGUGGuagUCGCuuCUuau-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 132049 0.68 0.996519
Target:  5'- gGCCGCUAUC-GUGggGG----GCGUCa -3'
miRNA:   3'- -CGGUGGUAGuCGCuuCUuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 131922 0.71 0.973485
Target:  5'- aGCCGCgG-CGGCGcGGAGgcacguGCGCCg -3'
miRNA:   3'- -CGGUGgUaGUCGCuUCUUauu---UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 131904 0.66 0.999607
Target:  5'- uGCCGCCGgcgagcaCGGCGcGGGcgGcGCGCg -3'
miRNA:   3'- -CGGUGGUa------GUCGCuUCUuaUuUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.