miRNA display CGI


Results 1 - 20 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 21922 0.65 0.447428
Target:  5'- cCGCgGGCGaggcggaggagaGGACCgCGGCUcgcggcgGCACCGg -3'
miRNA:   3'- -GCGgUCGCg-----------CCUGGgGCCGG-------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 6287 0.65 0.447428
Target:  5'- gCGCaGGCaGCGGACCUCGGCgaggucggccucgaUGCGCg- -3'
miRNA:   3'- -GCGgUCG-CGCCUGGGGCCG--------------GCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 90871 0.66 0.444859
Target:  5'- cCGCCGGUGUGGuagaucgccguaaucACCgacgggggguugCCGGCCGCuagcagcaGCCGg -3'
miRNA:   3'- -GCGGUCGCGCC---------------UGG------------GGCCGGCG--------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 30780 0.66 0.441447
Target:  5'- gGCCucgcGGCGCGucuucGGCCCgGGCgccuucgcgCGCGCCGa -3'
miRNA:   3'- gCGG----UCGCGC-----CUGGGgCCG---------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 123704 0.66 0.441447
Target:  5'- cCGCUGGCGCGGGgUCgcaCGGCaGCACUu -3'
miRNA:   3'- -GCGGUCGCGCCUgGG---GCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 43610 0.66 0.441447
Target:  5'- gGCCGGUGCuGGCCaCGGCCcucaaGCACa- -3'
miRNA:   3'- gCGGUCGCGcCUGGgGCCGG-----CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 127020 0.66 0.441447
Target:  5'- cCGCCcGCcccugGGGCCCCGcGCCuGCGCUg -3'
miRNA:   3'- -GCGGuCGcg---CCUGGGGC-CGG-CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 104045 0.66 0.441447
Target:  5'- uGCCAcCGCGcugCCCGGCCccaGCGCCGc -3'
miRNA:   3'- gCGGUcGCGCcugGGGCCGG---CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 82509 0.66 0.441447
Target:  5'- gCGUCuGGCGCGG-CgCUCGcGCaCGCGCCGa -3'
miRNA:   3'- -GCGG-UCGCGCCuG-GGGC-CG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 97176 0.66 0.441447
Target:  5'- uGCCGGCGCGcACgCgGGCCaugGCuACCGg -3'
miRNA:   3'- gCGGUCGCGCcUGgGgCCGG---CG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 76569 0.66 0.441447
Target:  5'- aGCCGGCGgccCGGcCCCCGaucuucGCCGcCGCUg -3'
miRNA:   3'- gCGGUCGC---GCCuGGGGC------CGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 132543 0.66 0.441447
Target:  5'- -uCCGGCGCGGcggGCUCgcgugCGGCCGCGgCGg -3'
miRNA:   3'- gcGGUCGCGCC---UGGG-----GCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 133593 0.66 0.441447
Target:  5'- gGCCucgcGGCGCGucuucGGCCCgGGCgccuucgcgCGCGCCGa -3'
miRNA:   3'- gCGG----UCGCGC-----CUGGGgCCG---------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 1411 0.66 0.441447
Target:  5'- aGgCAGgcaCGCGG-CCCCGcGCCcCGCCAg -3'
miRNA:   3'- gCgGUC---GCGCCuGGGGC-CGGcGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 64436 0.66 0.441447
Target:  5'- gCGCUcGcCGCGGgcGCCCCcGCCGcCGCCc -3'
miRNA:   3'- -GCGGuC-GCGCC--UGGGGcCGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 15757 0.66 0.441447
Target:  5'- gCGCCaaaGGUGU--ACCCgCGaGCCGCGCCGa -3'
miRNA:   3'- -GCGG---UCGCGccUGGG-GC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 3809 0.66 0.441447
Target:  5'- uGCCGGCaCgGGGCgUCGGCCGCGa-- -3'
miRNA:   3'- gCGGUCGcG-CCUGgGGCCGGCGUggu -5'
6683 3' -66.4 NC_001847.1 + 97327 0.66 0.441447
Target:  5'- gCGUCGGCGuCGcGCccgCCCGGCCGCGugUCAa -3'
miRNA:   3'- -GCGGUCGC-GCcUG---GGGCCGGCGU--GGU- -5'
6683 3' -66.4 NC_001847.1 + 82659 0.66 0.441447
Target:  5'- cCGCgAGCGCGGcGCgCCGcGCuCGUGCUg -3'
miRNA:   3'- -GCGgUCGCGCC-UGgGGC-CG-GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 132455 0.66 0.441447
Target:  5'- aGCUggagGGCGCGGAggacgagccgaUgCCGGCCGaGCCGc -3'
miRNA:   3'- gCGG----UCGCGCCU-----------GgGGCCGGCgUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.