miRNA display CGI


Results 1 - 20 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6690 5' -67.8 NC_001847.1 + 79984 0.66 0.391001
Target:  5'- gGCgaGCCGCUgcgcggcggugaCGC-CCCGcGCCCGCgCGg -3'
miRNA:   3'- gUGa-CGGCGG------------GCGaGGGC-CGGGCG-GC- -5'
6690 5' -67.8 NC_001847.1 + 28481 0.66 0.391001
Target:  5'- aCGC-GCCGCggaCGC-CgCGGCgCCGCCGc -3'
miRNA:   3'- -GUGaCGGCGg--GCGaGgGCCG-GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 131653 0.66 0.391001
Target:  5'- uCGC-GCgGCUCaugugcgaGCUCUCGGCgCGCCGg -3'
miRNA:   3'- -GUGaCGgCGGG--------CGAGGGCCGgGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 133474 0.66 0.391001
Target:  5'- aACUgGCCGCgCGacggCCCGGCC-GUCGg -3'
miRNA:   3'- gUGA-CGGCGgGCga--GGGCCGGgCGGC- -5'
6690 5' -67.8 NC_001847.1 + 2695 0.66 0.391001
Target:  5'- ---gGuCCGCCCGCggcgcCCCGGCCC-UCa -3'
miRNA:   3'- gugaC-GGCGGGCGa----GGGCCGGGcGGc -5'
6690 5' -67.8 NC_001847.1 + 105508 0.66 0.391001
Target:  5'- ---gGuCCGCCCGCggcgcCCCGGCCC-UCa -3'
miRNA:   3'- gugaC-GGCGGGCGa----GGGCCGGGcGGc -5'
6690 5' -67.8 NC_001847.1 + 4953 0.66 0.391001
Target:  5'- ---cGCCGCCCGuCUCUucaGGCCgggCGCCc -3'
miRNA:   3'- gugaCGGCGGGC-GAGGg--CCGG---GCGGc -5'
6690 5' -67.8 NC_001847.1 + 30661 0.66 0.391001
Target:  5'- aACUgGCCGCgCGacggCCCGGCC-GUCGg -3'
miRNA:   3'- gUGA-CGGCGgGCga--GGGCCGGgCGGC- -5'
6690 5' -67.8 NC_001847.1 + 14358 0.66 0.391001
Target:  5'- uGCUGCCgacGCUCGCagaugCCaCGGCCgCgGCCGu -3'
miRNA:   3'- gUGACGG---CGGGCGa----GG-GCCGG-G-CGGC- -5'
6690 5' -67.8 NC_001847.1 + 69639 0.66 0.391001
Target:  5'- gCACUGCgCGCgCCGC-CCCacaccgcgccauGGaCCGCCa -3'
miRNA:   3'- -GUGACG-GCG-GGCGaGGG------------CCgGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 60467 0.66 0.391001
Target:  5'- gGCcGCCGuCCUGC-CgCGGCUCgGCCGg -3'
miRNA:   3'- gUGaCGGC-GGGCGaGgGCCGGG-CGGC- -5'
6690 5' -67.8 NC_001847.1 + 87321 0.66 0.391001
Target:  5'- gCAUUgGCCGCCgGCaUCCCGuCCCcggugucgGCCGa -3'
miRNA:   3'- -GUGA-CGGCGGgCG-AGGGCcGGG--------CGGC- -5'
6690 5' -67.8 NC_001847.1 + 106848 0.66 0.390219
Target:  5'- uCGCgggGCCGCUuugguucUGgUCCCGGCCCcagucCCGg -3'
miRNA:   3'- -GUGa--CGGCGG-------GCgAGGGCCGGGc----GGC- -5'
6690 5' -67.8 NC_001847.1 + 4035 0.66 0.390219
Target:  5'- uCGCgggGCCGCUuugguucUGgUCCCGGCCCcagucCCGg -3'
miRNA:   3'- -GUGa--CGGCGG-------GCgAGGGCCGGGc----GGC- -5'
6690 5' -67.8 NC_001847.1 + 43002 0.66 0.390219
Target:  5'- ---cGCCGCCgggggggCGCg-CCGGgCCGCCGa -3'
miRNA:   3'- gugaCGGCGG-------GCGagGGCCgGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 57894 0.66 0.388656
Target:  5'- uCGCccGCCagcGCCCGCgcgaccgcgccaagUCCgGGCCCGgCGg -3'
miRNA:   3'- -GUGa-CGG---CGGGCG--------------AGGgCCGGGCgGC- -5'
6690 5' -67.8 NC_001847.1 + 133746 0.66 0.383221
Target:  5'- --gUGCCGCCgCGCgaguaCCGGCagcgcgugCUGCCGg -3'
miRNA:   3'- gugACGGCGG-GCGag---GGCCG--------GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 106515 0.66 0.383221
Target:  5'- aCACgGCCGCggGC-CCCGcGgCCGCCGc -3'
miRNA:   3'- -GUGaCGGCGggCGaGGGC-CgGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 134254 0.66 0.383221
Target:  5'- gGCgGCCGCggCgGC-CCCGGCgcgggCCGCCGc -3'
miRNA:   3'- gUGaCGGCG--GgCGaGGGCCG-----GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 77071 0.66 0.383221
Target:  5'- cCGCUGCgGCgCGCgcgcgcgCCaaucggCGGCCCGCgCGc -3'
miRNA:   3'- -GUGACGgCGgGCGa------GG------GCCGGGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.