miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 100886 0.66 0.980705
Target:  5'- aCGCGUAAGCCgguccGGGC----GCCGCa -3'
miRNA:   3'- cGCGCAUUUGGa----CCUGcaacUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 37416 0.66 0.980705
Target:  5'- gGCGCGUGgaagaGGCCgUGGcGCaGUcGGCgGCCa -3'
miRNA:   3'- -CGCGCAU-----UUGG-ACC-UG-CAaCUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 23938 0.66 0.980705
Target:  5'- aCGuCGgcGACCUGGGCaacGugCGCUc -3'
miRNA:   3'- cGC-GCauUUGGACCUGcaaCugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 58954 0.66 0.980705
Target:  5'- aGCuuGUucGACUgaGGcCGUUGGCCGCCc -3'
miRNA:   3'- -CGcgCAu-UUGGa-CCuGCAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 79782 0.66 0.980705
Target:  5'- cGCGcCGUGcaaaCUGGACGcgcGACUGCg -3'
miRNA:   3'- -CGC-GCAUuug-GACCUGCaa-CUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 122269 0.66 0.980488
Target:  5'- cGCGCccgAAGCgUGGcACGUguUGAgcguccaCCGCCg -3'
miRNA:   3'- -CGCGca-UUUGgACC-UGCA--ACU-------GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 39334 0.66 0.980488
Target:  5'- cGCGCGcUGcaggcgcAGCCU-GACGcUGAcgcCCGCCg -3'
miRNA:   3'- -CGCGC-AU-------UUGGAcCUGCaACU---GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 29701 0.66 0.979376
Target:  5'- uGCGCGagaaccgGAACUgcagauacuaaucauUGGcAUGUUGGCCaGCCu -3'
miRNA:   3'- -CGCGCa------UUUGG---------------ACC-UGCAACUGG-CGG- -5'
6731 3' -52.6 NC_001875.2 + 31485 0.66 0.978454
Target:  5'- aGCGCGgcGGCaaauuuuUGUUGcACCGCCa -3'
miRNA:   3'- -CGCGCauUUGgaccu--GCAAC-UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 34456 0.66 0.978454
Target:  5'- gGCGCGUuugguGGCCaUGGcUGUcgGGCUGUCa -3'
miRNA:   3'- -CGCGCAu----UUGG-ACCuGCAa-CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 125333 0.66 0.978454
Target:  5'- cGCGC---AAUCUGGGCaacGGCCGCUu -3'
miRNA:   3'- -CGCGcauUUGGACCUGcaaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 23832 0.66 0.978454
Target:  5'- cCGC---AGCCUGGuCGUgcacacgGACCGCg -3'
miRNA:   3'- cGCGcauUUGGACCuGCAa------CUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 95606 0.66 0.978454
Target:  5'- aGCaCGUAcaggGACCUGGugGacGACacgggCGCCg -3'
miRNA:   3'- -CGcGCAU----UUGGACCugCaaCUG-----GCGG- -5'
6731 3' -52.6 NC_001875.2 + 70450 0.66 0.978454
Target:  5'- aCGCGUAcGCguacaUGGgaaacgGCGUUGGCUGUCg -3'
miRNA:   3'- cGCGCAUuUGg----ACC------UGCAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 72443 0.66 0.977742
Target:  5'- -aGCGUGAACCguaauucggUGGAUGUguugcgcugcagcgUGGCCGaCg -3'
miRNA:   3'- cgCGCAUUUGG---------ACCUGCA--------------ACUGGCgG- -5'
6731 3' -52.6 NC_001875.2 + 128962 0.66 0.976014
Target:  5'- -gGCGUGAG-CUGGGCGagcggaUGACgCGCUc -3'
miRNA:   3'- cgCGCAUUUgGACCUGCa-----ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 40954 0.66 0.976014
Target:  5'- cUGUGUGGAUgUGGugGUgcugGGCaCGCg -3'
miRNA:   3'- cGCGCAUUUGgACCugCAa---CUG-GCGg -5'
6731 3' -52.6 NC_001875.2 + 61612 0.66 0.973378
Target:  5'- cGCGCGcuGGCUUGG-CGagaacUGAUCGCUa -3'
miRNA:   3'- -CGCGCauUUGGACCuGCa----ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 54358 0.66 0.973378
Target:  5'- cGCGCGcUGGuACC-GGuucacauacagcACGUcgGGCCGCCa -3'
miRNA:   3'- -CGCGC-AUU-UGGaCC------------UGCAa-CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 29990 0.66 0.973378
Target:  5'- uGCGCGgcGGCggUGGAcugcagcgugcCGUUGACCcaugcGCCg -3'
miRNA:   3'- -CGCGCauUUGg-ACCU-----------GCAACUGG-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.