miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 122410 0.66 0.913322
Target:  5'- uGGCCUGcgguuaGCGGugGgCGCGUGCaACg -3'
miRNA:   3'- gCUGGAC------UGCUugUgGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 130465 0.66 0.913322
Target:  5'- gGGCgCUcuCGAACGgCGCGUGCUAUUu -3'
miRNA:   3'- gCUG-GAcuGCUUGUgGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 95736 0.66 0.913322
Target:  5'- uGAgC-GGCGccgcCGCCGCGUGCUGCc -3'
miRNA:   3'- gCUgGaCUGCuu--GUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 70621 0.66 0.911533
Target:  5'- uGGCCUGccccgaacauuuguACGAcgGCGCCGCGUuuGCgUGCa -3'
miRNA:   3'- gCUGGAC--------------UGCU--UGUGGCGCG--CG-AUGa -5'
6732 5' -55.7 NC_001875.2 + 40104 0.66 0.907274
Target:  5'- gCGGCggGuCGGGCaACCGCGCGCa--- -3'
miRNA:   3'- -GCUGgaCuGCUUG-UGGCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 50147 0.66 0.907274
Target:  5'- -aACCgcGACaAGCGCCGCGUcaGCUACa -3'
miRNA:   3'- gcUGGa-CUGcUUGUGGCGCG--CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 128870 0.66 0.907274
Target:  5'- aGACCUGggcgGCGAAgccCGCUGCGCGg-ACg -3'
miRNA:   3'- gCUGGAC----UGCUU---GUGGCGCGCgaUGa -5'
6732 5' -55.7 NC_001875.2 + 26241 0.66 0.907274
Target:  5'- uGAUUUGAgaaaCGuGACGCC-CGCGCUGCa -3'
miRNA:   3'- gCUGGACU----GC-UUGUGGcGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 93669 0.66 0.907274
Target:  5'- aCGACCUGcguCGGGCGCU-CGCGUUcACg -3'
miRNA:   3'- -GCUGGACu--GCUUGUGGcGCGCGA-UGa -5'
6732 5' -55.7 NC_001875.2 + 41237 0.66 0.907274
Target:  5'- aCGGCCU--CGGcCGUCGCGUGCUACa -3'
miRNA:   3'- -GCUGGAcuGCUuGUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 42869 0.66 0.906656
Target:  5'- aCGACCgGgugcgccuugcguACGAA-ACCGCGCGCcGCg -3'
miRNA:   3'- -GCUGGaC-------------UGCUUgUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 88414 0.66 0.905413
Target:  5'- uCG-UCUGACGAguacggcggcagcgGCGgCGCGCGCcGCUu -3'
miRNA:   3'- -GCuGGACUGCU--------------UGUgGCGCGCGaUGA- -5'
6732 5' -55.7 NC_001875.2 + 120661 0.66 0.900987
Target:  5'- aCGAUUUGGCGAGuguCUGCGCgGUUGCg -3'
miRNA:   3'- -GCUGGACUGCUUgu-GGCGCG-CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 129189 0.66 0.900987
Target:  5'- aGGUCUGGCGAGCGCgaGCGCGgCgACg -3'
miRNA:   3'- gCUGGACUGCUUGUGg-CGCGC-GaUGa -5'
6732 5' -55.7 NC_001875.2 + 45391 0.66 0.900987
Target:  5'- aCGACaaGGCGAcGCGCCGCcuguucGCGCgcgACg -3'
miRNA:   3'- -GCUGgaCUGCU-UGUGGCG------CGCGa--UGa -5'
6732 5' -55.7 NC_001875.2 + 85206 0.66 0.900987
Target:  5'- uGAgCcGACGGGcCGCCGCGCGgUAg- -3'
miRNA:   3'- gCUgGaCUGCUU-GUGGCGCGCgAUga -5'
6732 5' -55.7 NC_001875.2 + 5088 0.66 0.900987
Target:  5'- uCGACCaccuaaugGGGCugCGCGCGCUAa- -3'
miRNA:   3'- -GCUGGacug----CUUGugGCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 72557 0.66 0.900987
Target:  5'- gGGCgCUG-CGGGCGCgggcgCGgGCGCUGCg -3'
miRNA:   3'- gCUG-GACuGCUUGUG-----GCgCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 7263 0.66 0.900987
Target:  5'- gCGGCCUGGCGcggguCGCCGaCGUGUUu-- -3'
miRNA:   3'- -GCUGGACUGCuu---GUGGC-GCGCGAuga -5'
6732 5' -55.7 NC_001875.2 + 83410 0.66 0.900987
Target:  5'- -cGCCaUGGCGccgcaaaACUGCGCGCUGCc -3'
miRNA:   3'- gcUGG-ACUGCuug----UGGCGCGCGAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.