miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6734 3' -60.4 NC_001875.2 + 33465 0.66 0.683291
Target:  5'- -gGCCAguggucgaaagUGGcGCGcCGCGCGCUggGguGCg -3'
miRNA:   3'- ugUGGU-----------ACC-CGU-GCGCGCGGa-CguCG- -5'
6734 3' -60.4 NC_001875.2 + 12422 0.66 0.683291
Target:  5'- cGCGCCAagcaGGccguuGCGUGCGCGCC-GCGGUg -3'
miRNA:   3'- -UGUGGUa---CC-----CGUGCGCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 43315 0.66 0.683291
Target:  5'- -aACCAgucguuugUGGGCAaccgcuugGCGgaaaGCCUGCAGUg -3'
miRNA:   3'- ugUGGU--------ACCCGUg-------CGCg---CGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 119216 0.66 0.683291
Target:  5'- -aGCCG-GGGCGC-CGCGCacaUGC-GCa -3'
miRNA:   3'- ugUGGUaCCCGUGcGCGCGg--ACGuCG- -5'
6734 3' -60.4 NC_001875.2 + 18326 0.66 0.683291
Target:  5'- gGCACCGccacagugGcGGCgucGCGCGCGCCgcacCAGUa -3'
miRNA:   3'- -UGUGGUa-------C-CCG---UGCGCGCGGac--GUCG- -5'
6734 3' -60.4 NC_001875.2 + 130849 0.66 0.683291
Target:  5'- -gGCCGUggcaaaagugGGGC-CGCGUGCCgUGCAuGUu -3'
miRNA:   3'- ugUGGUA----------CCCGuGCGCGCGG-ACGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 50836 0.66 0.683291
Target:  5'- gGCAgCAac-GCGuCGCGCGCCUuuuucaGCAGCa -3'
miRNA:   3'- -UGUgGUaccCGU-GCGCGCGGA------CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 74964 0.66 0.673243
Target:  5'- cGCGCCGcUGGGCGCGU-CGUaCUcCAGCu -3'
miRNA:   3'- -UGUGGU-ACCCGUGCGcGCG-GAcGUCG- -5'
6734 3' -60.4 NC_001875.2 + 107981 0.66 0.673243
Target:  5'- -aGCCAugaauuuuUGGGCggcuuuuaGCGCGUGCUUGguGg -3'
miRNA:   3'- ugUGGU--------ACCCG--------UGCGCGCGGACguCg -5'
6734 3' -60.4 NC_001875.2 + 7481 0.66 0.673243
Target:  5'- uGCGCCAUuggacgGGaGCACuuuGCGCaccacaaaacgGCCUGCAuGCa -3'
miRNA:   3'- -UGUGGUA------CC-CGUG---CGCG-----------CGGACGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 98044 0.66 0.673243
Target:  5'- uGCGCCGacGGGCAaGUGCGCCUagaccacccCGGCc -3'
miRNA:   3'- -UGUGGUa-CCCGUgCGCGCGGAc--------GUCG- -5'
6734 3' -60.4 NC_001875.2 + 117931 0.66 0.673243
Target:  5'- aGCugCAggccGGCGUGCGCGCC-GCcGCg -3'
miRNA:   3'- -UGugGUac--CCGUGCGCGCGGaCGuCG- -5'
6734 3' -60.4 NC_001875.2 + 103481 0.66 0.673243
Target:  5'- -aGCCGUcGcGCACGCGuCGCCcgGCAcGCc -3'
miRNA:   3'- ugUGGUAcC-CGUGCGC-GCGGa-CGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 41022 0.66 0.672236
Target:  5'- uGCACCAggauGGCGCccgcgguGCGCGUCUugGCgAGCg -3'
miRNA:   3'- -UGUGGUac--CCGUG-------CGCGCGGA--CG-UCG- -5'
6734 3' -60.4 NC_001875.2 + 18890 0.66 0.663161
Target:  5'- aACGCCuuuucauauuUGGGCGCGC-UGUUguugUGCGGCa -3'
miRNA:   3'- -UGUGGu---------ACCCGUGCGcGCGG----ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 34452 0.66 0.663161
Target:  5'- aACGCCAUGcGCGCGCaGCaaaaccugaGCUgGCAGUg -3'
miRNA:   3'- -UGUGGUACcCGUGCG-CG---------CGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 92507 0.66 0.663161
Target:  5'- gGCGCaaaacGGGCGCucguGCGCGCCcgGC-GCg -3'
miRNA:   3'- -UGUGgua--CCCGUG----CGCGCGGa-CGuCG- -5'
6734 3' -60.4 NC_001875.2 + 36989 0.66 0.663161
Target:  5'- uAUACauuaGUGGcGCGgGCGCGCaaCUGCcGCg -3'
miRNA:   3'- -UGUGg---UACC-CGUgCGCGCG--GACGuCG- -5'
6734 3' -60.4 NC_001875.2 + 79120 0.66 0.663161
Target:  5'- gGCGuuGUcGGCgGCGgGCGCC-GCGGCg -3'
miRNA:   3'- -UGUggUAcCCG-UGCgCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 31109 0.66 0.663161
Target:  5'- cGCGCgCGUGGGCGCcaugGCGaGaCCugUGCGGCc -3'
miRNA:   3'- -UGUG-GUACCCGUG----CGCgC-GG--ACGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.