miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 3' -57.2 NC_001875.2 + 100266 0.66 0.85157
Target:  5'- uGgGCgGCGCGCAAGGaagccgccgggcccaACCUGCa-- -3'
miRNA:   3'- gCgCGgCGCGCGUUUUg--------------UGGACGagc -5'
6735 3' -57.2 NC_001875.2 + 87369 0.66 0.850781
Target:  5'- uCGCGCCG-GUGCAcgacuuGGCGCaCUGCg-- -3'
miRNA:   3'- -GCGCGGCgCGCGUu-----UUGUG-GACGagc -5'
6735 3' -57.2 NC_001875.2 + 62759 0.66 0.850781
Target:  5'- cCGCGCCGUugaacGCGCAGGgguGCGuuUGCa-- -3'
miRNA:   3'- -GCGCGGCG-----CGCGUUU---UGUggACGagc -5'
6735 3' -57.2 NC_001875.2 + 10025 0.66 0.850781
Target:  5'- aCGUGaCCGUGauCAAGccACAgCUGCUCGa -3'
miRNA:   3'- -GCGC-GGCGCgcGUUU--UGUgGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 66041 0.66 0.850781
Target:  5'- gGCGCCGCGC---AGGCACC-GCgCGn -3'
miRNA:   3'- gCGCGGCGCGcguUUUGUGGaCGaGC- -5'
6735 3' -57.2 NC_001875.2 + 94270 0.66 0.850781
Target:  5'- uCGCGCCG-GCGCAuccacucGAUGCCgcguuucuggUGCUCc -3'
miRNA:   3'- -GCGCGGCgCGCGUu------UUGUGG----------ACGAGc -5'
6735 3' -57.2 NC_001875.2 + 72558 0.66 0.850781
Target:  5'- gGCGCUGCGgGCGcGGGCGCggGCgcugCGg -3'
miRNA:   3'- gCGCGGCGCgCGU-UUUGUGgaCGa---GC- -5'
6735 3' -57.2 NC_001875.2 + 40709 0.66 0.847602
Target:  5'- -cCGCCGCGCGCGcgucaucaacuacAACGCCaacacugucaUGUUCGa -3'
miRNA:   3'- gcGCGGCGCGCGUu------------UUGUGG----------ACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 3554 0.66 0.842776
Target:  5'- gGCGCCGUgGCGCGucucAAAUACUUGUcauacauuUCGc -3'
miRNA:   3'- gCGCGGCG-CGCGU----UUUGUGGACG--------AGC- -5'
6735 3' -57.2 NC_001875.2 + 25028 0.66 0.842776
Target:  5'- uGCGCUgGC-CGCc---CGCCUGCUCa -3'
miRNA:   3'- gCGCGG-CGcGCGuuuuGUGGACGAGc -5'
6735 3' -57.2 NC_001875.2 + 122846 0.66 0.842776
Target:  5'- uGCGCCGCGaCGUGuuucgcugcCACCcGUUCGu -3'
miRNA:   3'- gCGCGGCGC-GCGUuuu------GUGGaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 102771 0.66 0.842776
Target:  5'- aCGCGCCGUGgcaGCAAcACGCCccugGUaCGa -3'
miRNA:   3'- -GCGCGGCGCg--CGUUuUGUGGa---CGaGC- -5'
6735 3' -57.2 NC_001875.2 + 20801 0.66 0.842776
Target:  5'- aCGCGCaGUGCGCGGgcgucgucgcAGCGCUUG-UCGa -3'
miRNA:   3'- -GCGCGgCGCGCGUU----------UUGUGGACgAGC- -5'
6735 3' -57.2 NC_001875.2 + 22411 0.66 0.842776
Target:  5'- -uUGCCGCGCGUAcacgGCCUGCa-- -3'
miRNA:   3'- gcGCGGCGCGCGUuuugUGGACGagc -5'
6735 3' -57.2 NC_001875.2 + 6614 0.66 0.842776
Target:  5'- cCGCGCCGCaCGCGGugUACUcgUGCcagCGa -3'
miRNA:   3'- -GCGCGGCGcGCGUUuuGUGG--ACGa--GC- -5'
6735 3' -57.2 NC_001875.2 + 1175 0.66 0.841965
Target:  5'- gGCGUCGuCGCgGCAcuuugccacgcuGAaccgcauGCGCCUGCUCc -3'
miRNA:   3'- gCGCGGC-GCG-CGU------------UU-------UGUGGACGAGc -5'
6735 3' -57.2 NC_001875.2 + 66787 0.66 0.837881
Target:  5'- gGCGCCGCcguuguaaaacuuuuGCGCGu-ACGCCgGCagCGa -3'
miRNA:   3'- gCGCGGCG---------------CGCGUuuUGUGGaCGa-GC- -5'
6735 3' -57.2 NC_001875.2 + 83591 0.66 0.83458
Target:  5'- gGaCGCCGCGCGCcuuAuuCACggUGUUCGg -3'
miRNA:   3'- gC-GCGGCGCGCGu--UuuGUGg-ACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 98359 0.66 0.83458
Target:  5'- gGCGCaccccaGCGCGCGGcGCGCCacuUUCGa -3'
miRNA:   3'- gCGCGg-----CGCGCGUUuUGUGGac-GAGC- -5'
6735 3' -57.2 NC_001875.2 + 38178 0.66 0.83458
Target:  5'- aGCGCC-CGaCGCAGGucgucaACgUGCUCGu -3'
miRNA:   3'- gCGCGGcGC-GCGUUUug----UGgACGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.