miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 5' -53.5 NC_001875.2 + 48256 0.65 0.961577
Target:  5'- uCGCGUACaccaaaaAugUCUGAUAaauguacugcgauUGaCGCUGCCa -3'
miRNA:   3'- -GCGCGUG-------UugAGAUUGU-------------GC-GCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 6796 0.65 0.961218
Target:  5'- gCGCGCGCAAUguuucccgaucgCUGGCACGaguacacCGCgUGCg -3'
miRNA:   3'- -GCGCGUGUUGa-----------GAUUGUGC-------GCG-ACGg -5'
6735 5' -53.5 NC_001875.2 + 114463 0.66 0.95976
Target:  5'- gGgGCACAugcacagGCUCgaguuuauuaaccguUGGCGCGagcgGCUGCCg -3'
miRNA:   3'- gCgCGUGU-------UGAG---------------AUUGUGCg---CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 7597 0.66 0.958642
Target:  5'- cCGC-CGCAAUcgCcGGCGCGCaGUUGCCc -3'
miRNA:   3'- -GCGcGUGUUGa-GaUUGUGCG-CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 12887 0.66 0.958642
Target:  5'- aGCGUACAcaaGCUUgcGACACccuaGCGCcgGCCc -3'
miRNA:   3'- gCGCGUGU---UGAGa-UUGUG----CGCGa-CGG- -5'
6735 5' -53.5 NC_001875.2 + 60406 0.66 0.958642
Target:  5'- uGCuCAUuucCUCUAGCGCGCucguGCUcGCCa -3'
miRNA:   3'- gCGcGUGuu-GAGAUUGUGCG----CGA-CGG- -5'
6735 5' -53.5 NC_001875.2 + 47397 0.66 0.958642
Target:  5'- gGUGCACGAggCUGuACACGCGgU-CCa -3'
miRNA:   3'- gCGCGUGUUgaGAU-UGUGCGCgAcGG- -5'
6735 5' -53.5 NC_001875.2 + 12089 0.66 0.958642
Target:  5'- gCGCGCACAG-UCg---GCGCGCcGCg -3'
miRNA:   3'- -GCGCGUGUUgAGauugUGCGCGaCGg -5'
6735 5' -53.5 NC_001875.2 + 18407 0.66 0.958642
Target:  5'- aGCGCGCAACaaCUGAaaacguUGCGCU-CCa -3'
miRNA:   3'- gCGCGUGUUGa-GAUUgu----GCGCGAcGG- -5'
6735 5' -53.5 NC_001875.2 + 111887 0.66 0.958642
Target:  5'- gGCGC-CGGC-CgGACcguGCGCGCcgGCCg -3'
miRNA:   3'- gCGCGuGUUGaGaUUG---UGCGCGa-CGG- -5'
6735 5' -53.5 NC_001875.2 + 71647 0.66 0.958642
Target:  5'- cCGCcgGCGCAAUUC-AACgaaGCGCUGUa -3'
miRNA:   3'- -GCG--CGUGUUGAGaUUGug-CGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 118440 0.66 0.958642
Target:  5'- uGC-CAguACUCgcugugcuACGCGUGCUGCg -3'
miRNA:   3'- gCGcGUguUGAGau------UGUGCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 49402 0.66 0.958642
Target:  5'- aGUGCgACAugUCgcuagaGACGuuUGCGCUGCa -3'
miRNA:   3'- gCGCG-UGUugAGa-----UUGU--GCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 110180 0.66 0.958642
Target:  5'- gCGuCGCACugcGCUCgu-C-CGCGCUGgCg -3'
miRNA:   3'- -GC-GCGUGu--UGAGauuGuGCGCGACgG- -5'
6735 5' -53.5 NC_001875.2 + 9895 0.66 0.958642
Target:  5'- uCGCGUACAACgacagucgCcGGCugGCGUUcaugacagaccgGCCa -3'
miRNA:   3'- -GCGCGUGUUGa-------GaUUGugCGCGA------------CGG- -5'
6735 5' -53.5 NC_001875.2 + 96977 0.66 0.958642
Target:  5'- gCGCGCAUAACguccagcUUGACG-GCGCUGg- -3'
miRNA:   3'- -GCGCGUGUUGa------GAUUGUgCGCGACgg -5'
6735 5' -53.5 NC_001875.2 + 129044 0.66 0.958642
Target:  5'- gGCGCGCuuGCUC-GGCA-GCGgUGUCg -3'
miRNA:   3'- gCGCGUGu-UGAGaUUGUgCGCgACGG- -5'
6735 5' -53.5 NC_001875.2 + 99738 0.66 0.958642
Target:  5'- uGCGCGCcGC-CUuuuAUACGCGC-GCg -3'
miRNA:   3'- gCGCGUGuUGaGAu--UGUGCGCGaCGg -5'
6735 5' -53.5 NC_001875.2 + 10735 0.66 0.958642
Target:  5'- aGCaGCAgCAGCUgcacgUUGuCGCGCaGCUGCCu -3'
miRNA:   3'- gCG-CGU-GUUGA-----GAUuGUGCG-CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 90606 0.66 0.958642
Target:  5'- aCGCGCcgcccaccgACGcCUCU-GCGCGCGC-GUCu -3'
miRNA:   3'- -GCGCG---------UGUuGAGAuUGUGCGCGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.