miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 5' -66.2 NC_001875.2 + 12782 0.66 0.45932
Target:  5'- cCGgGGCGCcGcGCaCAUGCGCaCGCCGg -3'
miRNA:   3'- -GUgCCGCGcCuCGgGUGCGCG-GCGGC- -5'
6737 5' -66.2 NC_001875.2 + 61510 0.66 0.45932
Target:  5'- -uCGGCGCcGcAGUCCGCGUGCuCGCg- -3'
miRNA:   3'- guGCCGCGcC-UCGGGUGCGCG-GCGgc -5'
6737 5' -66.2 NC_001875.2 + 86276 0.66 0.45932
Target:  5'- gGCGGCGauacaGGAGCgcaaaucguaCACGUGCUGCg- -3'
miRNA:   3'- gUGCCGCg----CCUCGg---------GUGCGCGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 86382 0.66 0.45932
Target:  5'- gCGCGGCuGCGG-GCgCCGaGCGCCGaguuCGa -3'
miRNA:   3'- -GUGCCG-CGCCuCG-GGUgCGCGGCg---GC- -5'
6737 5' -66.2 NC_001875.2 + 63147 0.66 0.45932
Target:  5'- -cCGGCGCacGGGUCCACGgGCaCGCa- -3'
miRNA:   3'- guGCCGCGc-CUCGGGUGCgCG-GCGgc -5'
6737 5' -66.2 NC_001875.2 + 122716 0.66 0.45932
Target:  5'- -cUGGCGCGcGAGUCCACgGCGuCCGaguuCGu -3'
miRNA:   3'- guGCCGCGC-CUCGGGUG-CGC-GGCg---GC- -5'
6737 5' -66.2 NC_001875.2 + 46009 0.66 0.45932
Target:  5'- aGCaGGauCGGccGCCCACGCagcugGCCGCCGc -3'
miRNA:   3'- gUG-CCgcGCCu-CGGGUGCG-----CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 25858 0.66 0.45932
Target:  5'- cCAUGGCGCaucaaGAGCCUGCccauuGCGgCGCCc -3'
miRNA:   3'- -GUGCCGCGc----CUCGGGUG-----CGCgGCGGc -5'
6737 5' -66.2 NC_001875.2 + 33448 0.66 0.454121
Target:  5'- gCGCGuucaGCGCGGccGGCCaguggucgaaagugGCGCGCCGCgCGc -3'
miRNA:   3'- -GUGC----CGCGCC--UCGGg-------------UGCGCGGCG-GC- -5'
6737 5' -66.2 NC_001875.2 + 77640 0.66 0.454121
Target:  5'- gACGGCcugcacgugugucugGUGGAcGCCaaCGCaGCGCCGCUGu -3'
miRNA:   3'- gUGCCG---------------CGCCU-CGG--GUG-CGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 98616 0.66 0.454121
Target:  5'- gCGCGccaCGuCGGAGCCCGCGUGUUuuuuccccggcgaggGCCGc -3'
miRNA:   3'- -GUGCc--GC-GCCUCGGGUGCGCGG---------------CGGC- -5'
6737 5' -66.2 NC_001875.2 + 54816 0.66 0.450673
Target:  5'- aCGCGGCuGCcGAGCCCgaacaccucaaACGCGcCCGUg- -3'
miRNA:   3'- -GUGCCG-CGcCUCGGG-----------UGCGC-GGCGgc -5'
6737 5' -66.2 NC_001875.2 + 3841 0.66 0.450673
Target:  5'- -cCGGCGCGGccgcAGCCUccaacaugugACGauCCGCCGc -3'
miRNA:   3'- guGCCGCGCC----UCGGG----------UGCgcGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 77044 0.66 0.450673
Target:  5'- cCGCGuCGCGGuGCUa--GUGCCGCCc -3'
miRNA:   3'- -GUGCcGCGCCuCGGgugCGCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 48260 0.66 0.449813
Target:  5'- gGCGGCGCcccgccgGGAcacCUCAUGUGuCCGCCGc -3'
miRNA:   3'- gUGCCGCG-------CCUc--GGGUGCGC-GGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 55330 0.66 0.449813
Target:  5'- gACGGUGauGAcGCgCCGCuucggggGCGCCGCCu -3'
miRNA:   3'- gUGCCGCgcCU-CG-GGUG-------CGCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 121900 0.66 0.448096
Target:  5'- -cCGGCGUGGgcagcaccGcuagaauacuugcgGCCCGCGCGCCaGUCGc -3'
miRNA:   3'- guGCCGCGCC--------U--------------CGGGUGCGCGG-CGGC- -5'
6737 5' -66.2 NC_001875.2 + 112829 0.66 0.442115
Target:  5'- gCACGugcaaaGCGCGuugcGGCCUGCGCGCacuGCCGu -3'
miRNA:   3'- -GUGC------CGCGCc---UCGGGUGCGCGg--CGGC- -5'
6737 5' -66.2 NC_001875.2 + 37045 0.66 0.442115
Target:  5'- gCACGGCGCGu-GCaCGCGCGCggacgcggccaCGCUGu -3'
miRNA:   3'- -GUGCCGCGCcuCGgGUGCGCG-----------GCGGC- -5'
6737 5' -66.2 NC_001875.2 + 2672 0.66 0.442115
Target:  5'- gGCGGCGCcuGGGGCaacUGCGgCGCCu -3'
miRNA:   3'- gUGCCGCG--CCUCGgguGCGCgGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.