Results 1 - 20 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6737 | 5' | -66.2 | NC_001875.2 | + | 61510 | 0.66 | 0.45932 |
Target: 5'- -uCGGCGCcGcAGUCCGCGUGCuCGCg- -3' miRNA: 3'- guGCCGCGcC-UCGGGUGCGCG-GCGgc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 86276 | 0.66 | 0.45932 |
Target: 5'- gGCGGCGauacaGGAGCgcaaaucguaCACGUGCUGCg- -3' miRNA: 3'- gUGCCGCg----CCUCGg---------GUGCGCGGCGgc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 86382 | 0.66 | 0.45932 |
Target: 5'- gCGCGGCuGCGG-GCgCCGaGCGCCGaguuCGa -3' miRNA: 3'- -GUGCCG-CGCCuCG-GGUgCGCGGCg---GC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 63147 | 0.66 | 0.45932 |
Target: 5'- -cCGGCGCacGGGUCCACGgGCaCGCa- -3' miRNA: 3'- guGCCGCGc-CUCGGGUGCgCG-GCGgc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 46009 | 0.66 | 0.45932 |
Target: 5'- aGCaGGauCGGccGCCCACGCagcugGCCGCCGc -3' miRNA: 3'- gUG-CCgcGCCu-CGGGUGCG-----CGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 12782 | 0.66 | 0.45932 |
Target: 5'- cCGgGGCGCcGcGCaCAUGCGCaCGCCGg -3' miRNA: 3'- -GUgCCGCGcCuCGgGUGCGCG-GCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 122716 | 0.66 | 0.45932 |
Target: 5'- -cUGGCGCGcGAGUCCACgGCGuCCGaguuCGu -3' miRNA: 3'- guGCCGCGC-CUCGGGUG-CGC-GGCg---GC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 25858 | 0.66 | 0.45932 |
Target: 5'- cCAUGGCGCaucaaGAGCCUGCccauuGCGgCGCCc -3' miRNA: 3'- -GUGCCGCGc----CUCGGGUG-----CGCgGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 77640 | 0.66 | 0.454121 |
Target: 5'- gACGGCcugcacgugugucugGUGGAcGCCaaCGCaGCGCCGCUGu -3' miRNA: 3'- gUGCCG---------------CGCCU-CGG--GUG-CGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 33448 | 0.66 | 0.454121 |
Target: 5'- gCGCGuucaGCGCGGccGGCCaguggucgaaagugGCGCGCCGCgCGc -3' miRNA: 3'- -GUGC----CGCGCC--UCGGg-------------UGCGCGGCG-GC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 98616 | 0.66 | 0.454121 |
Target: 5'- gCGCGccaCGuCGGAGCCCGCGUGUUuuuuccccggcgaggGCCGc -3' miRNA: 3'- -GUGCc--GC-GCCUCGGGUGCGCGG---------------CGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 54816 | 0.66 | 0.450673 |
Target: 5'- aCGCGGCuGCcGAGCCCgaacaccucaaACGCGcCCGUg- -3' miRNA: 3'- -GUGCCG-CGcCUCGGG-----------UGCGC-GGCGgc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 77044 | 0.66 | 0.450673 |
Target: 5'- cCGCGuCGCGGuGCUa--GUGCCGCCc -3' miRNA: 3'- -GUGCcGCGCCuCGGgugCGCGGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 3841 | 0.66 | 0.450673 |
Target: 5'- -cCGGCGCGGccgcAGCCUccaacaugugACGauCCGCCGc -3' miRNA: 3'- guGCCGCGCC----UCGGG----------UGCgcGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 48260 | 0.66 | 0.449813 |
Target: 5'- gGCGGCGCcccgccgGGAcacCUCAUGUGuCCGCCGc -3' miRNA: 3'- gUGCCGCG-------CCUc--GGGUGCGC-GGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 55330 | 0.66 | 0.449813 |
Target: 5'- gACGGUGauGAcGCgCCGCuucggggGCGCCGCCu -3' miRNA: 3'- gUGCCGCgcCU-CG-GGUG-------CGCGGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 121900 | 0.66 | 0.448096 |
Target: 5'- -cCGGCGUGGgcagcaccGcuagaauacuugcgGCCCGCGCGCCaGUCGc -3' miRNA: 3'- guGCCGCGCC--------U--------------CGGGUGCGCGG-CGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 112829 | 0.66 | 0.442115 |
Target: 5'- gCACGugcaaaGCGCGuugcGGCCUGCGCGCacuGCCGu -3' miRNA: 3'- -GUGC------CGCGCc---UCGGGUGCGCGg--CGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 2672 | 0.66 | 0.442115 |
Target: 5'- gGCGGCGCcuGGGGCaacUGCGgCGCCu -3' miRNA: 3'- gUGCCGCG--CCUCGgguGCGCgGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 50035 | 0.66 | 0.442115 |
Target: 5'- gGCGGCGaGGcGGCCgGCcCGUCGCUGu -3' miRNA: 3'- gUGCCGCgCC-UCGGgUGcGCGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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