miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6739 5' -57.1 NC_001875.2 + 57742 0.66 0.863739
Target:  5'- --cGCGCGGCGCguagucgcgaAACGCC-UCCuGCAg -3'
miRNA:   3'- ccaCGUGCUGCGg---------UUGCGGuAGG-CGU- -5'
6739 5' -57.1 NC_001875.2 + 5803 0.66 0.863739
Target:  5'- cGGcUGCGCauaagguaguaGACuGCCAGCGCCG-CCGa- -3'
miRNA:   3'- -CC-ACGUG-----------CUG-CGGUUGCGGUaGGCgu -5'
6739 5' -57.1 NC_001875.2 + 17956 0.66 0.863739
Target:  5'- uGUGCcCGGCaGCCAGCG-CGUCCcCAc -3'
miRNA:   3'- cCACGuGCUG-CGGUUGCgGUAGGcGU- -5'
6739 5' -57.1 NC_001875.2 + 49861 0.66 0.863739
Target:  5'- cGGccgGCGCGccuUGCCGGCGCCAaCCa-- -3'
miRNA:   3'- -CCa--CGUGCu--GCGGUUGCGGUaGGcgu -5'
6739 5' -57.1 NC_001875.2 + 45097 0.66 0.863739
Target:  5'- cGGUGCcCGACGUgcGCGCCuUCauguGCGa -3'
miRNA:   3'- -CCACGuGCUGCGguUGCGGuAGg---CGU- -5'
6739 5' -57.1 NC_001875.2 + 118788 0.66 0.863739
Target:  5'- gGGUgGCGCGAC-CCAaaGCGCUuAUuuGCGc -3'
miRNA:   3'- -CCA-CGUGCUGcGGU--UGCGG-UAggCGU- -5'
6739 5' -57.1 NC_001875.2 + 90788 0.66 0.863739
Target:  5'- cGUGCACGAccaCGCCGcucguaaaaACGCC-UCCa-- -3'
miRNA:   3'- cCACGUGCU---GCGGU---------UGCGGuAGGcgu -5'
6739 5' -57.1 NC_001875.2 + 89121 0.66 0.863739
Target:  5'- --cGCGCGACGaCCGgguGCGCCuUgCGUAc -3'
miRNA:   3'- ccaCGUGCUGC-GGU---UGCGGuAgGCGU- -5'
6739 5' -57.1 NC_001875.2 + 56508 0.66 0.863739
Target:  5'- --cGC-CGACGCCAucaccaacaccgACGCCAU-CGCc -3'
miRNA:   3'- ccaCGuGCUGCGGU------------UGCGGUAgGCGu -5'
6739 5' -57.1 NC_001875.2 + 93529 0.66 0.862984
Target:  5'- -uUGCAUGcCGCCGGCcuugucggcgcucGCCA-CCGCGu -3'
miRNA:   3'- ccACGUGCuGCGGUUG-------------CGGUaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 116826 0.66 0.862984
Target:  5'- cGUGCugGACGCCuugauaaGACaCCAcgaCCGCc -3'
miRNA:   3'- cCACGugCUGCGG-------UUGcGGUa--GGCGu -5'
6739 5' -57.1 NC_001875.2 + 87901 0.66 0.859176
Target:  5'- cGUGuCACGuccACGCCucugcaggaauaccaGAUGCCA-CCGCAa -3'
miRNA:   3'- cCAC-GUGC---UGCGG---------------UUGCGGUaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 21695 0.66 0.856093
Target:  5'- --aGCGCGACGCgGugcuGCGguCCAgCCGCAg -3'
miRNA:   3'- ccaCGUGCUGCGgU----UGC--GGUaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 89305 0.66 0.856093
Target:  5'- --cGCAUGGCGCCGcCaCCAUgCGCu -3'
miRNA:   3'- ccaCGUGCUGCGGUuGcGGUAgGCGu -5'
6739 5' -57.1 NC_001875.2 + 99363 0.66 0.856093
Target:  5'- uGG-GCGCGccCGCCaaGugGCCAaagcgCCGCAc -3'
miRNA:   3'- -CCaCGUGCu-GCGG--UugCGGUa----GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 10668 0.66 0.856093
Target:  5'- cGGacUGCACuuGGCGCaGGCGCUG-CCGCAa -3'
miRNA:   3'- -CC--ACGUG--CUGCGgUUGCGGUaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 42556 0.66 0.856093
Target:  5'- cGGUGguCG-CGCCcagccGCGCCAggUCgGCGc -3'
miRNA:   3'- -CCACguGCuGCGGu----UGCGGU--AGgCGU- -5'
6739 5' -57.1 NC_001875.2 + 18158 0.66 0.856093
Target:  5'- uGGUGCgGCG-CGCgCGACGCCG-CCa-- -3'
miRNA:   3'- -CCACG-UGCuGCG-GUUGCGGUaGGcgu -5'
6739 5' -57.1 NC_001875.2 + 54939 0.66 0.856093
Target:  5'- --cGCugGGCGCCGccccuuugcGCGCgCGUuuGCc -3'
miRNA:   3'- ccaCGugCUGCGGU---------UGCG-GUAggCGu -5'
6739 5' -57.1 NC_001875.2 + 84169 0.66 0.856093
Target:  5'- --cGCGCGGCGCgCcGCGgCCgcGUCCGUg -3'
miRNA:   3'- ccaCGUGCUGCG-GuUGC-GG--UAGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.