miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 5' -56 NC_001875.2 + 29419 0.66 0.87826
Target:  5'- -cGGCGcUCGGCaacGGCGagCGCGACGCc -3'
miRNA:   3'- aaUUGU-AGCCG---CCGCgaGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 108861 0.66 0.87826
Target:  5'- -aGAUcUUGGCGGCGCUggaaacCACcaaaGACGCa -3'
miRNA:   3'- aaUUGuAGCCGCCGCGA------GUG----CUGCGa -5'
6741 5' -56 NC_001875.2 + 92011 0.66 0.87826
Target:  5'- ---uUAUUGGCGGCGUUUGCGuacuuUGCg -3'
miRNA:   3'- aauuGUAGCCGCCGCGAGUGCu----GCGa -5'
6741 5' -56 NC_001875.2 + 113678 0.66 0.87826
Target:  5'- --cACAgUGGCGGCG-UCGCG-CGCg -3'
miRNA:   3'- aauUGUaGCCGCCGCgAGUGCuGCGa -5'
6741 5' -56 NC_001875.2 + 98351 0.66 0.87826
Target:  5'- ----aAUCGGuUGGCGCaccccagcgCGCGGCGCg -3'
miRNA:   3'- aauugUAGCC-GCCGCGa--------GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 65596 0.66 0.870873
Target:  5'- ----aGUUGGCGGCGCagUGCGAaaCGCUc -3'
miRNA:   3'- aauugUAGCCGCCGCGa-GUGCU--GCGA- -5'
6741 5' -56 NC_001875.2 + 63725 0.66 0.870873
Target:  5'- -cGGCGaCGGCgGGCGCUUcgccgGCGuCGCUc -3'
miRNA:   3'- aaUUGUaGCCG-CCGCGAG-----UGCuGCGA- -5'
6741 5' -56 NC_001875.2 + 48015 0.66 0.870873
Target:  5'- -aGAUcgUGGUGGCgGCcCACGugGCc -3'
miRNA:   3'- aaUUGuaGCCGCCG-CGaGUGCugCGa -5'
6741 5' -56 NC_001875.2 + 65775 0.66 0.870873
Target:  5'- -cGGCGggCGGCGGCGCgUCGuCGuugaGCGCc -3'
miRNA:   3'- aaUUGUa-GCCGCCGCG-AGU-GC----UGCGa -5'
6741 5' -56 NC_001875.2 + 119401 0.66 0.868613
Target:  5'- aUGGCGUCcaccGCGGCGCgCACGcaacggccugcuugGCGCg -3'
miRNA:   3'- aAUUGUAGc---CGCCGCGaGUGC--------------UGCGa -5'
6741 5' -56 NC_001875.2 + 75286 0.66 0.863263
Target:  5'- aUGGCGUCGGCgauGGCGU---CGGCGUUg -3'
miRNA:   3'- aAUUGUAGCCG---CCGCGaguGCUGCGA- -5'
6741 5' -56 NC_001875.2 + 75388 0.66 0.863263
Target:  5'- aUGGCGUCGGCgauGGCGU---CGGCGUUg -3'
miRNA:   3'- aAUUGUAGCCG---CCGCGaguGCUGCGA- -5'
6741 5' -56 NC_001875.2 + 90455 0.66 0.863263
Target:  5'- -aGGCGUCGGUGG-GCggCGCGuaauuuCGCUg -3'
miRNA:   3'- aaUUGUAGCCGCCgCGa-GUGCu-----GCGA- -5'
6741 5' -56 NC_001875.2 + 6944 0.66 0.863263
Target:  5'- --cGCGUCGuGCGuGCGCcgcgacaucgcCACGGCGCg -3'
miRNA:   3'- aauUGUAGC-CGC-CGCGa----------GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 78150 0.66 0.863263
Target:  5'- gUGACAaacgUGuuGGCGCUgCGCGGCGCc -3'
miRNA:   3'- aAUUGUa---GCcgCCGCGA-GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 75647 0.66 0.863263
Target:  5'- -cGGCGUCGGCgauGGCGUUgGCGucgGCGUc -3'
miRNA:   3'- aaUUGUAGCCG---CCGCGAgUGC---UGCGa -5'
6741 5' -56 NC_001875.2 + 131746 0.66 0.863263
Target:  5'- --uGCAUugggcCGGCGGCGgaUCggGCGGCGCg -3'
miRNA:   3'- aauUGUA-----GCCGCCGCg-AG--UGCUGCGa -5'
6741 5' -56 NC_001875.2 + 28656 0.66 0.863263
Target:  5'- -gAACGUguggaaCGGCGGCGUgggcgaCAUGGCGUa -3'
miRNA:   3'- aaUUGUA------GCCGCCGCGa-----GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 55112 0.66 0.863263
Target:  5'- ---uCGUCGGCGucCGCgUCAcCGACGCUc -3'
miRNA:   3'- aauuGUAGCCGCc-GCG-AGU-GCUGCGA- -5'
6741 5' -56 NC_001875.2 + 21949 0.66 0.863263
Target:  5'- -aAACGUUcGCGGCGCggggauggGCGGCGCc -3'
miRNA:   3'- aaUUGUAGcCGCCGCGag------UGCUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.