miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 3' -54.6 NC_001875.2 + 96004 0.66 0.941836
Target:  5'- aCCCUGCAAAA-GGCcACCaGaCGCC-Ca -3'
miRNA:   3'- gGGGAUGUUUUgCCG-UGG-CaGCGGuG- -5'
6742 3' -54.6 NC_001875.2 + 129179 0.66 0.941836
Target:  5'- gCCCCa-------GGCGCCGccggCGCCGCa -3'
miRNA:   3'- -GGGGauguuuugCCGUGGCa---GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 28843 0.66 0.941836
Target:  5'- -gCCgacACGGAcgGCgGGCACuUGUCGCCGCu -3'
miRNA:   3'- ggGGa--UGUUU--UG-CCGUG-GCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 51190 0.66 0.941836
Target:  5'- gCCC-ACG--ACGGCGCgGUucuggCGCCGCc -3'
miRNA:   3'- gGGGaUGUuuUGCCGUGgCA-----GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 49362 0.66 0.941836
Target:  5'- gCCgUggUGCAAcaugcggcGGCGGUACCGUuccugcCGCCGCg -3'
miRNA:   3'- -GGgG--AUGUU--------UUGCCGUGGCA------GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 53775 0.66 0.941369
Target:  5'- aCCCCUcguucacgcaguACAAcGCGGCcaagaacaucaacGCCGgcacCGCCAg -3'
miRNA:   3'- -GGGGA------------UGUUuUGCCG-------------UGGCa---GCGGUg -5'
6742 3' -54.6 NC_001875.2 + 32960 0.66 0.939953
Target:  5'- uUCCC---GAAACGGCGCCcgcgcacauuagCGCCACc -3'
miRNA:   3'- -GGGGaugUUUUGCCGUGGca----------GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 43013 0.66 0.937054
Target:  5'- -gCCUcCAuuGCGaGUGCCGcgCGCCGCg -3'
miRNA:   3'- ggGGAuGUuuUGC-CGUGGCa-GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 39034 0.66 0.937054
Target:  5'- aCCUCgGCAucggcGGCGGCGCUGUa-CCGCa -3'
miRNA:   3'- -GGGGaUGUu----UUGCCGUGGCAgcGGUG- -5'
6742 3' -54.6 NC_001875.2 + 20633 0.66 0.937054
Target:  5'- gCCCgugaGCAacaaaAAACGGCGCgCGcCGCCcaGCg -3'
miRNA:   3'- gGGGa---UGU-----UUUGCCGUG-GCaGCGG--UG- -5'
6742 3' -54.6 NC_001875.2 + 96283 0.66 0.937054
Target:  5'- gCCCCaaaaagccgucguagGCGGccgggugGGCGGCcagcACCGUgGCCGCg -3'
miRNA:   3'- -GGGGa--------------UGUU-------UUGCCG----UGGCAgCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 56695 0.66 0.937054
Target:  5'- gCUgUGCA--ACGGUugGCCGagGCCGCg -3'
miRNA:   3'- gGGgAUGUuuUGCCG--UGGCagCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 14484 0.66 0.937054
Target:  5'- uCCCCgacgGCcAGcCGGCccGCCGguucgcccgCGCCGCg -3'
miRNA:   3'- -GGGGa---UGuUUuGCCG--UGGCa--------GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 83004 0.66 0.937054
Target:  5'- -nCCggcggGCuuGAAGCGGCGCCGUaGCgCGCg -3'
miRNA:   3'- ggGGa----UG--UUUUGCCGUGGCAgCG-GUG- -5'
6742 3' -54.6 NC_001875.2 + 50493 0.66 0.937054
Target:  5'- gCgCgUGCGc-GCGGCACCagcgCGCCGCg -3'
miRNA:   3'- -GgGgAUGUuuUGCCGUGGca--GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 62631 0.66 0.936069
Target:  5'- gCCCgaACAAGcguacuggccguCGGCGCCG-CGCaCGCg -3'
miRNA:   3'- -GGGgaUGUUUu-----------GCCGUGGCaGCG-GUG- -5'
6742 3' -54.6 NC_001875.2 + 58245 0.66 0.934068
Target:  5'- cCCCCaucgccGCAGAaaAUGGCGCUcgugucacccgggguGUCGUCGCg -3'
miRNA:   3'- -GGGGa-----UGUUU--UGCCGUGG---------------CAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 98286 0.66 0.932029
Target:  5'- gCCCCgcgGCG--ACcGCACUGUgGCCAa -3'
miRNA:   3'- -GGGGa--UGUuuUGcCGUGGCAgCGGUg -5'
6742 3' -54.6 NC_001875.2 + 9110 0.66 0.932029
Target:  5'- aCCCCgccACGAAcuCGGaCGCCGUggacucgcgCGCCAg -3'
miRNA:   3'- -GGGGa--UGUUUu-GCC-GUGGCA---------GCGGUg -5'
6742 3' -54.6 NC_001875.2 + 61192 0.66 0.932029
Target:  5'- uUCCgcauugcacGCAAAcGCGGCGCCGUCG-UACa -3'
miRNA:   3'- gGGGa--------UGUUU-UGCCGUGGCAGCgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.