miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6743 3' -62.9 NC_001875.2 + 92537 0.66 0.582427
Target:  5'- cGCCGGCACggugugcagCGCgCACuuGGUGuCGGCGg- -3'
miRNA:   3'- -CGGCCGUG---------GCG-GUG--UCACcGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 33235 0.66 0.582427
Target:  5'- cGCCgGGCGCCGUUuCGGc-GCGGCGcUCc -3'
miRNA:   3'- -CGG-CCGUGGCGGuGUCacCGCCGC-AG- -5'
6743 3' -62.9 NC_001875.2 + 113609 0.66 0.582427
Target:  5'- aGUCGGCggcggGCCGCgGCGGcaaGaGCGGCGa- -3'
miRNA:   3'- -CGGCCG-----UGGCGgUGUCa--C-CGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 53999 0.66 0.582427
Target:  5'- aGCUGGU--CGCgCACGGccuUGGCGGCG-Cg -3'
miRNA:   3'- -CGGCCGugGCG-GUGUC---ACCGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 39047 0.66 0.579491
Target:  5'- cGgCGGCGCUGuaCCGCAagcgcauggccauuGUGcgccGCGGCGUCg -3'
miRNA:   3'- -CgGCCGUGGC--GGUGU--------------CAC----CGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 65790 0.66 0.572653
Target:  5'- cGCgCGGCGuCgGCgCGCGGUGccugcGCGGCGcCa -3'
miRNA:   3'- -CG-GCCGU-GgCG-GUGUCAC-----CGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 102567 0.66 0.572653
Target:  5'- aCCGcGCcCCGCCggcGCGGUcGGCGGCc-- -3'
miRNA:   3'- cGGC-CGuGGCGG---UGUCA-CCGCCGcag -5'
6743 3' -62.9 NC_001875.2 + 93782 0.66 0.572653
Target:  5'- gGgCGGCAgCGCaaaaAGUGGaugauGGCGUCa -3'
miRNA:   3'- -CgGCCGUgGCGgug-UCACCg----CCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 99373 0.66 0.572653
Target:  5'- cGCCaaguGGCcaaAgCGCCGCAccGGCGGCGcCa -3'
miRNA:   3'- -CGG----CCG---UgGCGGUGUcaCCGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 53863 0.66 0.569728
Target:  5'- cGCUGGCACCGUCggccuguuggucguGCGGccgccGCGGCG-Ca -3'
miRNA:   3'- -CGGCCGUGGCGG--------------UGUCac---CGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 92458 0.66 0.566807
Target:  5'- uGCacaGGCACgagugGCCGCAGgguaggcacgagacGGCGGgCGUCa -3'
miRNA:   3'- -CGg--CCGUGg----CGGUGUCa-------------CCGCC-GCAG- -5'
6743 3' -62.9 NC_001875.2 + 130913 0.66 0.562918
Target:  5'- aGCCGuC-CgGUCacgGCAGUGGCGGCGg- -3'
miRNA:   3'- -CGGCcGuGgCGG---UGUCACCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 63716 0.66 0.562918
Target:  5'- uGUCGGuCGCgGCgACGGcgGGCgcuucgccGGCGUCg -3'
miRNA:   3'- -CGGCC-GUGgCGgUGUCa-CCG--------CCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 36098 0.66 0.562918
Target:  5'- cGCgCGGCA--GCaCGCGGcGGCGGCGcCg -3'
miRNA:   3'- -CG-GCCGUggCG-GUGUCaCCGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 60153 0.66 0.562918
Target:  5'- cGUCGuGCACCacGCCGCAuuguGUcGGCGGCa-- -3'
miRNA:   3'- -CGGC-CGUGG--CGGUGU----CA-CCGCCGcag -5'
6743 3' -62.9 NC_001875.2 + 48541 0.66 0.562918
Target:  5'- cGCCGGUGCUggGCCAC-GUGuGCGuGCuUCa -3'
miRNA:   3'- -CGGCCGUGG--CGGUGuCAC-CGC-CGcAG- -5'
6743 3' -62.9 NC_001875.2 + 117199 0.66 0.560006
Target:  5'- gGCCGGCACCucgucgaagcgaaaGCCguACucgGGCGGCa-- -3'
miRNA:   3'- -CGGCCGUGG--------------CGG--UGucaCCGCCGcag -5'
6743 3' -62.9 NC_001875.2 + 119008 0.66 0.55613
Target:  5'- aGCCGGCGCCGCCGgguuuguguucgaAGacgccuacguagacUGGUccGGCGUg -3'
miRNA:   3'- -CGGCCGUGGCGGUg------------UC--------------ACCG--CCGCAg -5'
6743 3' -62.9 NC_001875.2 + 68165 0.66 0.553228
Target:  5'- cGCUGcGCGCCGCgcaagacgauuaCACGGUGGaCGGUcuUCg -3'
miRNA:   3'- -CGGC-CGUGGCG------------GUGUCACC-GCCGc-AG- -5'
6743 3' -62.9 NC_001875.2 + 113355 0.66 0.553228
Target:  5'- gGCgCGGCugCGUCGCuGcgGcGCGGCG-Ca -3'
miRNA:   3'- -CG-GCCGugGCGGUGuCa-C-CGCCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.