miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 26231 0.66 0.973177
Target:  5'- ----cACGUGcaacCGCUcuUGGCGCUGCg -3'
miRNA:   3'- auuuuUGCACa---GCGAcuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 119056 0.66 0.973177
Target:  5'- ---cGGCGUG-CGCaUGugcGCGGCGCCccgGCu -3'
miRNA:   3'- auuuUUGCACaGCG-AC---UGCCGCGG---CG- -5'
6745 3' -52.7 NC_001875.2 + 99384 0.66 0.973177
Target:  5'- -cAAAGCGc--CGCaccGGCGGCGCCaGCg -3'
miRNA:   3'- auUUUUGCacaGCGa--CUGCCGCGG-CG- -5'
6745 3' -52.7 NC_001875.2 + 31589 0.66 0.973177
Target:  5'- aAGGGugGUGUC-----CGGCGCCGUg -3'
miRNA:   3'- aUUUUugCACAGcgacuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 130341 0.66 0.973177
Target:  5'- aAAAGGCaggGUcGUCGCUGAC-GCaCCGCu -3'
miRNA:   3'- aUUUUUG---CA-CAGCGACUGcCGcGGCG- -5'
6745 3' -52.7 NC_001875.2 + 104750 0.66 0.973177
Target:  5'- --cGGGCGUGg-GCgu-CGGCGCCGa -3'
miRNA:   3'- auuUUUGCACagCGacuGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 122229 0.66 0.973177
Target:  5'- ----cACGUGaagcCGCUGGaggagGGCGgCCGCg -3'
miRNA:   3'- auuuuUGCACa---GCGACUg----CCGC-GGCG- -5'
6745 3' -52.7 NC_001875.2 + 59597 0.66 0.972614
Target:  5'- ---cGACGUGcgcgagcacgggCGCuuuggcggauUGGCGGaCGCCGCg -3'
miRNA:   3'- auuuUUGCACa-----------GCG----------ACUGCC-GCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 7467 0.66 0.97233
Target:  5'- cGAcAGCGUGagcaacaagcUCaugccgcucauuugGCUGAuCGGCGCCGUg -3'
miRNA:   3'- aUUuUUGCAC----------AG--------------CGACU-GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 75476 0.66 0.970279
Target:  5'- cGAugGCGUcggcGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- aUUuuUGCA----CAGCgACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 30936 0.66 0.970279
Target:  5'- --cGAGCGUcuccgcgCGCUG-CGGCGCC-Cg -3'
miRNA:   3'- auuUUUGCAca-----GCGACuGCCGCGGcG- -5'
6745 3' -52.7 NC_001875.2 + 75296 0.66 0.970279
Target:  5'- cGAugGCGUcggcGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- aUUuuUGCA----CAGCgACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 5068 0.66 0.970279
Target:  5'- gGAAAACGUcGUCGCgcacgucGACcaccuaauGGgGCUGCg -3'
miRNA:   3'- aUUUUUGCA-CAGCGa------CUG--------CCgCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 65436 0.66 0.970279
Target:  5'- ---cGGCGUGcacCGCUGGCGGUcgGUgGCc -3'
miRNA:   3'- auuuUUGCACa--GCGACUGCCG--CGgCG- -5'
6745 3' -52.7 NC_001875.2 + 101642 0.66 0.970279
Target:  5'- ---cAACGgccGUCGCggcGaACGGCGCCa- -3'
miRNA:   3'- auuuUUGCa--CAGCGa--C-UGCCGCGGcg -5'
6745 3' -52.7 NC_001875.2 + 75446 0.66 0.970279
Target:  5'- cGAugGCGUcggcGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- aUUuuUGCA----CAGCgACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 75374 0.66 0.970279
Target:  5'- --uGAugGcGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- auuUUugCaCAGCgACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 49442 0.66 0.970279
Target:  5'- -cGAAACcg--CGCggcugacggugGACGGCGCCGUg -3'
miRNA:   3'- auUUUUGcacaGCGa----------CUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 13243 0.66 0.970279
Target:  5'- aAAAAACa---CGUUaaacacGGCGGCGCCGCg -3'
miRNA:   3'- aUUUUUGcacaGCGA------CUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 83328 0.66 0.970279
Target:  5'- --uAAACGcgGUC-UUGACguGGUGCCGCa -3'
miRNA:   3'- auuUUUGCa-CAGcGACUG--CCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.