miRNA display CGI


Results 1 - 20 of 578 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 5' -57.7 NC_001875.2 + 104139 0.66 0.844521
Target:  5'- cGCcuCGUUGUGCGgcucaaACGGCGGCGCgauGGCg -3'
miRNA:   3'- -CGc-GCAGCGCGCg-----UGUCGUUGUG---CCG- -5'
6745 5' -57.7 NC_001875.2 + 95356 0.66 0.844521
Target:  5'- gGCGCacgUGCaCGCGuCGGCGGaaaACGGCg -3'
miRNA:   3'- -CGCGca-GCGcGCGU-GUCGUUg--UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 90125 0.66 0.844521
Target:  5'- aUGCGaCGC-CGCGCAGCGcCGC-GCa -3'
miRNA:   3'- cGCGCaGCGcGCGUGUCGUuGUGcCG- -5'
6745 5' -57.7 NC_001875.2 + 26221 0.66 0.844521
Target:  5'- gGCGaccaGggcCGCGUACcggGGCAugGCGGCg -3'
miRNA:   3'- -CGCg---CagcGCGCGUG---UCGUugUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 14560 0.66 0.844521
Target:  5'- aCGCGgccaUCGUgaaGCGCAuCGGC--CGCGGCa -3'
miRNA:   3'- cGCGC----AGCG---CGCGU-GUCGuuGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 67595 0.66 0.844521
Target:  5'- aGCcCGUCgGUGUGCACcGUuuggaacguGCGCGGCu -3'
miRNA:   3'- -CGcGCAG-CGCGCGUGuCGu--------UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 100977 0.66 0.844521
Target:  5'- aGCGCc-CGCGCuGCaggccGCGGCGuuuGCGGCg -3'
miRNA:   3'- -CGCGcaGCGCG-CG-----UGUCGUug-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 48829 0.66 0.844521
Target:  5'- cGCGCGcuacgGCGCcgcuucaagcccGC-CGGCGACgaGCGGCg -3'
miRNA:   3'- -CGCGCag---CGCG------------CGuGUCGUUG--UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 90996 0.66 0.844521
Target:  5'- uGCGCGUCuugGCGaGCGCcgucuuGCc-CACGGCc -3'
miRNA:   3'- -CGCGCAG---CGCgCGUGu-----CGuuGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 110585 0.66 0.844521
Target:  5'- cCGCGcCGCGCGCGCgccuggaccAGCuuCGCcaacuGGUg -3'
miRNA:   3'- cGCGCaGCGCGCGUG---------UCGuuGUG-----CCG- -5'
6745 5' -57.7 NC_001875.2 + 99591 0.66 0.844521
Target:  5'- uGCGgGUUGuCGCGC-CGGUAugucuGCGCguuGGCg -3'
miRNA:   3'- -CGCgCAGC-GCGCGuGUCGU-----UGUG---CCG- -5'
6745 5' -57.7 NC_001875.2 + 114956 0.66 0.843721
Target:  5'- gGCGcCGcUGCGCGUACgcauacaaccaggGGCGuACACGuGCg -3'
miRNA:   3'- -CGC-GCaGCGCGCGUG-------------UCGU-UGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 26554 0.66 0.84292
Target:  5'- gGCGUGcuggcagauuUC-CGUGCACAGauugagcguuuGCACGGCg -3'
miRNA:   3'- -CGCGC----------AGcGCGCGUGUCgu---------UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 69088 0.66 0.842116
Target:  5'- uGCGCGUUcaacgGCGCGggccacacguacauUACGGCcGACAuUGGCg -3'
miRNA:   3'- -CGCGCAG-----CGCGC--------------GUGUCG-UUGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 40785 0.66 0.839695
Target:  5'- gGCGUGcugCGCGUGCcCAGCAccaccACAuccacacagucguucCGGCc -3'
miRNA:   3'- -CGCGCa--GCGCGCGuGUCGU-----UGU---------------GCCG- -5'
6745 5' -57.7 NC_001875.2 + 66809 0.66 0.83644
Target:  5'- uGCGCGUacgccggcaGCGaGUugAGCAcaaACgACGGCu -3'
miRNA:   3'- -CGCGCAg--------CGCgCGugUCGU---UG-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 41120 0.66 0.83644
Target:  5'- -gGCGUCGUGUGC-CAGC---GCGuGCc -3'
miRNA:   3'- cgCGCAGCGCGCGuGUCGuugUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 88721 0.66 0.83644
Target:  5'- gGCGCa-UGCGCGCcgAGUuuaacgAGCACGGCc -3'
miRNA:   3'- -CGCGcaGCGCGCGugUCG------UUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 59575 0.66 0.83644
Target:  5'- aUGUGUUGCGC-UGCAGCGuggccgacguGCGCGaGCa -3'
miRNA:   3'- cGCGCAGCGCGcGUGUCGU----------UGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 71107 0.66 0.83644
Target:  5'- aCuCGUCGUGCGUuugguguuGCuGUGGCugGGCg -3'
miRNA:   3'- cGcGCAGCGCGCG--------UGuCGUUGugCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.