miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6746 3' -54.1 NC_001875.2 + 125528 0.65 0.950006
Target:  5'- uUCGGCGCUGCCccaccauGCUUGuuGCGGugCAu -3'
miRNA:   3'- -AGUUGCGGCGG-------CGGGUuuUGCUugGU- -5'
6746 3' -54.1 NC_001875.2 + 43316 0.66 0.946075
Target:  5'- aCGACGCCGCgGC---GGGCGuGCCGc -3'
miRNA:   3'- aGUUGCGGCGgCGgguUUUGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 81988 0.66 0.946075
Target:  5'- gCAAgGCgCGCCGgCCGgcgcgcaaaaagAAGCGAAUCGg -3'
miRNA:   3'- aGUUgCG-GCGGCgGGU------------UUUGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 52755 0.66 0.946075
Target:  5'- --cGCGCUGCCGUCCGAGuacuuguuuccCGAGCa- -3'
miRNA:   3'- aguUGCGGCGGCGGGUUUu----------GCUUGgu -5'
6746 3' -54.1 NC_001875.2 + 88251 0.66 0.945626
Target:  5'- --cGCGCCGCCGCugCCGccguacucgucAGACGAagaagacGCCGc -3'
miRNA:   3'- aguUGCGGCGGCG--GGU-----------UUUGCU-------UGGU- -5'
6746 3' -54.1 NC_001875.2 + 23687 0.66 0.945626
Target:  5'- aCGACcagGCUGCgGCCCAAuauacucAACGGcCCAa -3'
miRNA:   3'- aGUUG---CGGCGgCGGGUU-------UUGCUuGGU- -5'
6746 3' -54.1 NC_001875.2 + 18214 0.66 0.945175
Target:  5'- gCGGCGCCGUCGCCgCucuugccgccGCGGcccGCCGc -3'
miRNA:   3'- aGUUGCGGCGGCGG-Guuu-------UGCU---UGGU- -5'
6746 3' -54.1 NC_001875.2 + 88859 0.66 0.941946
Target:  5'- gCAACgGCCGCCGCCUuucaaagcauuguuGGCGcGCUg -3'
miRNA:   3'- aGUUG-CGGCGGCGGGuu------------UUGCuUGGu -5'
6746 3' -54.1 NC_001875.2 + 1743 0.66 0.941475
Target:  5'- cCGcCGCCGCCGCCauuuccgucGGCGGaugugACCAc -3'
miRNA:   3'- aGUuGCGGCGGCGGguu------UUGCU-----UGGU- -5'
6746 3' -54.1 NC_001875.2 + 92760 0.66 0.941475
Target:  5'- gUUGGCGUauucguaaaCGCCGCCauuguCGAGCCAa -3'
miRNA:   3'- -AGUUGCG---------GCGGCGGguuuuGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 91202 0.66 0.941475
Target:  5'- cCGGCGCgUGCgCGCCCAGu-UGAGCUu -3'
miRNA:   3'- aGUUGCG-GCG-GCGGGUUuuGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 54575 0.66 0.941475
Target:  5'- gCGGCgGCCGCuuCGCCCGGcGGCGcGCCc -3'
miRNA:   3'- aGUUG-CGGCG--GCGGGUU-UUGCuUGGu -5'
6746 3' -54.1 NC_001875.2 + 80304 0.66 0.941475
Target:  5'- -gAGCGCCGUCGCCagc-GCGu-CCGa -3'
miRNA:   3'- agUUGCGGCGGCGGguuuUGCuuGGU- -5'
6746 3' -54.1 NC_001875.2 + 126103 0.66 0.941475
Target:  5'- -aAGCGCCGCguCGCCaucAACG-ACCAc -3'
miRNA:   3'- agUUGCGGCG--GCGGguuUUGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 1791 0.66 0.941475
Target:  5'- cCGcCGCCGCCGCCauuuccgucGGCGGaugugACCAc -3'
miRNA:   3'- aGUuGCGGCGGCGGguu------UUGCU-----UGGU- -5'
6746 3' -54.1 NC_001875.2 + 97929 0.66 0.941475
Target:  5'- cUCAACGUguCGCUGCaCCAAAcCGAcCCc -3'
miRNA:   3'- -AGUUGCG--GCGGCG-GGUUUuGCUuGGu -5'
6746 3' -54.1 NC_001875.2 + 68717 0.66 0.941002
Target:  5'- ----gGCCGCgCGCCCGgccgcuaucccauGGACGAGCg- -3'
miRNA:   3'- aguugCGGCG-GCGGGU-------------UUUGCUUGgu -5'
6746 3' -54.1 NC_001875.2 + 19049 0.66 0.936628
Target:  5'- -uGugGCCG-CGCUCGAggUGAACUc -3'
miRNA:   3'- agUugCGGCgGCGGGUUuuGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 32824 0.66 0.936628
Target:  5'- aCGGCGCCGCUugcgagcgugGCaCCAAAACcugguGCCGu -3'
miRNA:   3'- aGUUGCGGCGG----------CG-GGUUUUGcu---UGGU- -5'
6746 3' -54.1 NC_001875.2 + 56492 0.66 0.936628
Target:  5'- cCAACGCCGaCGCCaucgcCGAcGCCAu -3'
miRNA:   3'- aGUUGCGGCgGCGGguuuuGCU-UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.