Results 1 - 20 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6749 | 5' | -51.4 | NC_001875.2 | + | 49440 | 0.66 | 0.987971 |
Target: 5'- ----uACGAaaCCgCGCGGCugACGGUg -3' miRNA: 3'- guuuuUGCU--GGaGCGCUGugUGCCGu -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 60912 | 0.66 | 0.987971 |
Target: 5'- uCGAAAGCGggGCCggCGCuGACGCACcGCu -3' miRNA: 3'- -GUUUUUGC--UGGa-GCG-CUGUGUGcCGu -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 58706 | 0.66 | 0.987971 |
Target: 5'- gGAGAGCGugUacagCGCGACGCGCa--- -3' miRNA: 3'- gUUUUUGCugGa---GCGCUGUGUGccgu -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 62944 | 0.66 | 0.987971 |
Target: 5'- -uGAcuCGACaCUCGCcGgACGCGGCGu -3' miRNA: 3'- guUUuuGCUG-GAGCGcUgUGUGCCGU- -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 23158 | 0.66 | 0.986356 |
Target: 5'- gAAGGGCGGCUgCG-GGCACGgCGGCu -3' miRNA: 3'- gUUUUUGCUGGaGCgCUGUGU-GCCGu -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 63262 | 0.66 | 0.986356 |
Target: 5'- ---cGGCGGCCa-GCGGCGCcacGCGGUg -3' miRNA: 3'- guuuUUGCUGGagCGCUGUG---UGCCGu -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 78154 | 0.66 | 0.986356 |
Target: 5'- --cAAACGugUUgGCGcUGCGCGGCGc -3' miRNA: 3'- guuUUUGCugGAgCGCuGUGUGCCGU- -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 39319 | 0.66 | 0.986356 |
Target: 5'- aGAAAACGcGCCggGCG-CGCACGaGCGc -3' miRNA: 3'- gUUUUUGC-UGGagCGCuGUGUGC-CGU- -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 81905 | 0.66 | 0.986356 |
Target: 5'- ---cGACGACCagcugauuaGCG-CGCGCGGCu -3' miRNA: 3'- guuuUUGCUGGag-------CGCuGUGUGCCGu -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 79271 | 0.66 | 0.986186 |
Target: 5'- uGGAGACGAUgUCaaugucuGUGGCGCGCGuGCGc -3' miRNA: 3'- gUUUUUGCUGgAG-------CGCUGUGUGC-CGU- -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 76190 | 0.66 | 0.98458 |
Target: 5'- -----gUGA--UCGCGGCACAUGGCGc -3' miRNA: 3'- guuuuuGCUggAGCGCUGUGUGCCGU- -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 37893 | 0.66 | 0.98458 |
Target: 5'- ---cAGCGGCUugcuggCGCGGCAC-UGGCAc -3' miRNA: 3'- guuuUUGCUGGa-----GCGCUGUGuGCCGU- -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 53848 | 0.66 | 0.98458 |
Target: 5'- ---cAAUGGUCUCGCG-CACGCuGGCAc -3' miRNA: 3'- guuuUUGCUGGAGCGCuGUGUG-CCGU- -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 21318 | 0.66 | 0.98458 |
Target: 5'- aAGAAGCG-CCagGUGGCcCGCGGCc -3' miRNA: 3'- gUUUUUGCuGGagCGCUGuGUGCCGu -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 121934 | 0.66 | 0.98458 |
Target: 5'- ----uGCGGCCacaucuUUGUGguGCGCGCGGCAg -3' miRNA: 3'- guuuuUGCUGG------AGCGC--UGUGUGCCGU- -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 7206 | 0.66 | 0.98458 |
Target: 5'- ---cAACGACCcgcUCGUGuccaACACGGCc -3' miRNA: 3'- guuuUUGCUGG---AGCGCug--UGUGCCGu -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 127278 | 0.66 | 0.982633 |
Target: 5'- ----uGCGGCugCUCGCGuuGCugGCGGCc -3' miRNA: 3'- guuuuUGCUG--GAGCGC--UGugUGCCGu -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 98467 | 0.66 | 0.982633 |
Target: 5'- -cGAGACGGCCUgcuucuuuUGCGACugcCGCGuGCGu -3' miRNA: 3'- guUUUUGCUGGA--------GCGCUGu--GUGC-CGU- -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 76863 | 0.66 | 0.982633 |
Target: 5'- gAAAGGCGcCCagcgcgaGCGACGCGucCGGCAa -3' miRNA: 3'- gUUUUUGCuGGag-----CGCUGUGU--GCCGU- -5' |
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6749 | 5' | -51.4 | NC_001875.2 | + | 71886 | 0.66 | 0.982633 |
Target: 5'- cCAGccGCGAauaCUCGuCGACcagccgcgACACGGCAc -3' miRNA: 3'- -GUUuuUGCUg--GAGC-GCUG--------UGUGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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