miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 5' -58.4 NC_001875.2 + 54874 0.66 0.76861
Target:  5'- gCAGCacguugcucccgACGCgGACUCGucCGCCAGUUg -3'
miRNA:   3'- -GUCG------------UGCGgCUGAGUucGCGGUCGAg -5'
6750 5' -58.4 NC_001875.2 + 2648 0.66 0.76861
Target:  5'- aCGGaCACGUCuACUUGcGGCGCCGGCg- -3'
miRNA:   3'- -GUC-GUGCGGcUGAGU-UCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 7800 0.66 0.76861
Target:  5'- -uGcCACGUCGuGCUUucGCGCCGGUUUa -3'
miRNA:   3'- guC-GUGCGGC-UGAGuuCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 52212 0.66 0.76861
Target:  5'- -uGCGCGCCGugcaaACUgGAcGCGCgacugCGGCUCa -3'
miRNA:   3'- guCGUGCGGC-----UGAgUU-CGCG-----GUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 50509 0.66 0.762896
Target:  5'- cCAGCGCGCCGcGCggCAcgaugacgaggaggaGGCGCCgccGGCg- -3'
miRNA:   3'- -GUCGUGCGGC-UGa-GU---------------UCGCGG---UCGag -5'
6750 5' -58.4 NC_001875.2 + 72711 0.66 0.759064
Target:  5'- -uGCGCGCCGuuaauugcGCUUgcGCGUCGGC-Ca -3'
miRNA:   3'- guCGUGCGGC--------UGAGuuCGCGGUCGaG- -5'
6750 5' -58.4 NC_001875.2 + 74534 0.66 0.759064
Target:  5'- -uGCGuCGCCGACgaCGcGCGCCcGUUCg -3'
miRNA:   3'- guCGU-GCGGCUGa-GUuCGCGGuCGAG- -5'
6750 5' -58.4 NC_001875.2 + 65799 0.66 0.759064
Target:  5'- uCGGCGCGCggugccugcgCGGCgcCAAGCGCUugcagcuGCUCu -3'
miRNA:   3'- -GUCGUGCG----------GCUGa-GUUCGCGGu------CGAG- -5'
6750 5' -58.4 NC_001875.2 + 31124 0.66 0.758102
Target:  5'- -cGCGCGCCGcagcaaugugcauGCUUAAcGCGCCGcGCg- -3'
miRNA:   3'- guCGUGCGGC-------------UGAGUU-CGCGGU-CGag -5'
6750 5' -58.4 NC_001875.2 + 98042 0.66 0.758102
Target:  5'- -cGUGCGCCGACgggCAAGUGCgccuagaccacccCGGcCUCa -3'
miRNA:   3'- guCGUGCGGCUGa--GUUCGCG-------------GUC-GAG- -5'
6750 5' -58.4 NC_001875.2 + 85289 0.66 0.749403
Target:  5'- aCGGUuuGCGCgGGCggcgCGGGCGCgGGCa- -3'
miRNA:   3'- -GUCG--UGCGgCUGa---GUUCGCGgUCGag -5'
6750 5' -58.4 NC_001875.2 + 38177 0.66 0.749403
Target:  5'- gAGCGC-CCGACgCAGGuCGUCAacguGCUCg -3'
miRNA:   3'- gUCGUGcGGCUGaGUUC-GCGGU----CGAG- -5'
6750 5' -58.4 NC_001875.2 + 57687 0.66 0.743557
Target:  5'- aAGCugG-CGGCggCGGGCGCCgcgcccucgaacuccAGCUCu -3'
miRNA:   3'- gUCGugCgGCUGa-GUUCGCGG---------------UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 124202 0.66 0.739639
Target:  5'- gAGCGCGUCGGCguguGUGCgCAGgUCg -3'
miRNA:   3'- gUCGUGCGGCUGaguuCGCG-GUCgAG- -5'
6750 5' -58.4 NC_001875.2 + 42935 0.66 0.739639
Target:  5'- gCAGCGCGCCa----AAG-GCCAGCUUg -3'
miRNA:   3'- -GUCGUGCGGcugagUUCgCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 92185 0.66 0.739639
Target:  5'- -cGCGcCGCCGGCcCAAacucGCGCgCGGUUCg -3'
miRNA:   3'- guCGU-GCGGCUGaGUU----CGCG-GUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 18770 0.66 0.739639
Target:  5'- -cGCGCGUCGcCaUCAAa-GCCAGCUCu -3'
miRNA:   3'- guCGUGCGGCuG-AGUUcgCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 69251 0.66 0.738657
Target:  5'- aCGGCGCGCugggccgCGGCUCGAGCcguGgCGGCg- -3'
miRNA:   3'- -GUCGUGCG-------GCUGAGUUCG---CgGUCGag -5'
6750 5' -58.4 NC_001875.2 + 98652 0.66 0.73669
Target:  5'- gCAGCgagGCGCUGGaauguaaggugugcCUCGAGCGgCAGCg- -3'
miRNA:   3'- -GUCG---UGCGGCU--------------GAGUUCGCgGUCGag -5'
6750 5' -58.4 NC_001875.2 + 75622 0.66 0.729779
Target:  5'- uCGGCguugGCGUCGGCguuGGCGUCGGCgUCg -3'
miRNA:   3'- -GUCG----UGCGGCUGaguUCGCGGUCG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.