miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 3' -54.2 NC_001875.2 + 32467 0.66 0.946784
Target:  5'- cGguGCGGCGCuuuggccacuuGGCGGGcGCGCCcaaguugcGCGg -3'
miRNA:   3'- -CguCGUCGCG-----------CUGCUUuUGCGG--------UGCa -5'
6751 3' -54.2 NC_001875.2 + 26081 0.66 0.946784
Target:  5'- --uGCAGCGCGG-----GCGUCACGUu -3'
miRNA:   3'- cguCGUCGCGCUgcuuuUGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 40693 0.66 0.946784
Target:  5'- --cGCGGCGCauuUGGAAcCGCCGCGc -3'
miRNA:   3'- cguCGUCGCGcu-GCUUUuGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 3209 0.66 0.946784
Target:  5'- uGCGGCGGCGguugGAUGgcGugGgCGCGUu -3'
miRNA:   3'- -CGUCGUCGCg---CUGCuuUugCgGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 95245 0.66 0.946784
Target:  5'- -gGGCGacGCGCaGCGGcuGCGCCGCa- -3'
miRNA:   3'- cgUCGU--CGCGcUGCUuuUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 122548 0.66 0.946784
Target:  5'- gGCGcGCAGUGCacauguauauCGggGACGCgCGCGa -3'
miRNA:   3'- -CGU-CGUCGCGcu--------GCuuUUGCG-GUGCa -5'
6751 3' -54.2 NC_001875.2 + 51706 0.66 0.946784
Target:  5'- aGCAGCGaCGCGcACGAGugcGACGacCCAUGg -3'
miRNA:   3'- -CGUCGUcGCGC-UGCUU---UUGC--GGUGCa -5'
6751 3' -54.2 NC_001875.2 + 99414 0.66 0.946784
Target:  5'- cGC-GCAGCGCauuguuGGCc--AGCGCCGCGa -3'
miRNA:   3'- -CGuCGUCGCG------CUGcuuUUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 83794 0.66 0.946784
Target:  5'- uGUAGCGcGCGCccucgugccuGugGGcgGCGgCCACGUg -3'
miRNA:   3'- -CGUCGU-CGCG----------CugCUuuUGC-GGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 30825 0.66 0.946784
Target:  5'- cGCGGCGGCaaacagguuguuGCGcaaaaccgcCGcAAACGCCGCGg -3'
miRNA:   3'- -CGUCGUCG------------CGCu--------GCuUUUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 6938 0.66 0.946784
Target:  5'- -gAGCAaCGCGuCGugcguGCGCCGCGa -3'
miRNA:   3'- cgUCGUcGCGCuGCuuu--UGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 48260 0.66 0.945892
Target:  5'- -aGGC-GCGCGGCGuccauuguuCGCCAUGa -3'
miRNA:   3'- cgUCGuCGCGCUGCuuuu-----GCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 124806 0.66 0.944079
Target:  5'- uGCAcCAGCGUGGCGgcGcuaaaggucagauacGCGCCGCc- -3'
miRNA:   3'- -CGUcGUCGCGCUGCuuU---------------UGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 11932 0.66 0.942226
Target:  5'- uGCGcGCGGCGCGcCGAcuGUGCgCGCGa -3'
miRNA:   3'- -CGU-CGUCGCGCuGCUuuUGCG-GUGCa -5'
6751 3' -54.2 NC_001875.2 + 90604 0.66 0.942226
Target:  5'- uGUAGCA-CGCGACGGccGAgGCCGUGUa -3'
miRNA:   3'- -CGUCGUcGCGCUGCUu-UUgCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 36407 0.66 0.942226
Target:  5'- cCAGCcGCGC-ACGcuggccGGCGCCGCGg -3'
miRNA:   3'- cGUCGuCGCGcUGCuu----UUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 46965 0.66 0.942226
Target:  5'- uGCuGCAGgGCGAgaCGGuga-GCCGCGa -3'
miRNA:   3'- -CGuCGUCgCGCU--GCUuuugCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 84169 0.66 0.942226
Target:  5'- cGC-GCGGCGCGccGCGGccGCGUC-CGUg -3'
miRNA:   3'- -CGuCGUCGCGC--UGCUuuUGCGGuGCA- -5'
6751 3' -54.2 NC_001875.2 + 118887 0.66 0.942226
Target:  5'- cGC-GCcGcCGCGACGAGAcCGUCACa- -3'
miRNA:   3'- -CGuCGuC-GCGCUGCUUUuGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 76807 0.66 0.942226
Target:  5'- uGCAGCaccaAGCGUacGACaAAAagcGCGCCGCGc -3'
miRNA:   3'- -CGUCG----UCGCG--CUGcUUU---UGCGGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.